BAC Information

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BAC

Clone NameMSMg01-369E09
Chromosome8 (Build37)
Map Location 34,118,477 - 34,118,921
singlet/doubletsinglet
Overlap genenone
Upstream gene2010007E15Rik, EG666589, EG546052, LOC100042715
Downstream geneLOC628408, EG628412, Wrn, Purg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2, Rbpms, LOC100042769
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369E09.T7 (MSMg01no369_e09.b1)MSMg01-369E09.TJ (MSMg01no369_e09.g1)
ACCAG476301AG476302
length770768
length of high quality
(start - end)		373 (37 - 409)445 (66 - 510)
definitionCHROMAT_FILE: MSMg01no369_e09.b1 PHD_FILE: MSMg01no369_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:57 2005CHROMAT_FILE: MSMg01no369_e09.g1 PHD_FILE: MSMg01no369_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTG
TTCCGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTC
CACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATT
TAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTA
TTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCA
TTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGAA
ATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCT
ATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGA
TTTGACCTTATTACAAGGAGATAAGTATGGATTGATTTCGCATTCTTCTA
CTCGATATCTATCAGTTGTGTCTGTTTCATTTGTTGAATATGCTGTCTTT
CTTCCTCTGGATTGGTTTAGCTCCCTTGTCGAATATCTTGTGATCTTTAT
TGCGTTGTTTTTTCTCTGCGTCTTCTTTTCTTTTTCTTCTGCCTTATTTG
CTTTGTCTCTTTTTCCTCATTTTTGTTTTCTTTCTTCCTATTTGCTCCTG
TTCTTTCTTTTTTACCCTTTTTCCCCGTTTTTCTCTTTTTCTACCCCTTT
TTTTCTTTTTTTTCCCTTTTTCTTCTCTATTTTTTTTCCCTTTTTTTCTA
ACTTCTTATTCTTTTTCTTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXATCTCCCCTGTATTTAAGGTCAGGTCAAAGATTCT
CAGTCAACATTGTTTGAAAGCCATAATGAGTAGCATCAGACTTCCATACA
CATATGCTGCACTCTATTGTATGTGAGAAATAAAGGAGACAAGCCATTTT
CCATGCAATAGAATCAGCACATGGGCATCACTCATGCATTTATTCTCCTT
AAGTTCTTTTTCTTTAGTTCCATTGAACTATTTCTTTGTGTATTCTTCAA
ACTCTTTGAATTCTTTGACAAAGTTTATGAATGTTCTATTAAATTCTGTG
TCATGGGATTCATGTAGGTAGTTCTTATTGGCAAACATTTCTACAGAACT
AGTGAGCTTTGGAGAGGCAATACTGACTTGATCTTTCATGTTGCATATAT
TTTTGCAAGGAGATCTGTGCATGTGGGTTTGTTAAGTTTTGTGTCTAGTA
TGGAGAGAGTAAGTTGGGGCAGCAGAGAGAATGTACTAGTGGGTTGTGCC
TCAAGGTTGAAAATGGCTTGATGGTTTGCATATGCTCAGTCCCAGGAGAA
CTATGACTTATAAGGTGTGGTCCTGCAAGACTATGGTTAGATACTGTATT
TTTTTGTCTCTTATAACCTTCCCCCTATTTTGTCTGGTAACCTATATTTT
CCGCTTTCTTCCCTTTTTTCAGTAATTAGTTCTAAACTTCTCATCCCCTC
CCTTTTTTTTTGCCCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_e09.g1 MSMg01no369_e09.g1 CHROMAT_FILE:
MSMg01no369_e09.g1 PHD_FILE: MSMg01no369_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:57 2005
         (445 letters)



>mm_chr8_34118277_34119121
          Length = 845

 Score =  861 bits (445), Expect = 0.0
 Identities = 445/445 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctcccctgtatttaaggtcaggtcaaagattctcagtcaacattgtttgaaagccata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctcccctgtatttaaggtcaggtcaaagattctcagtcaacattgtttgaaagccata 260

                                                                       
Query: 61  atgagtagcatcagacttccatacacatatgctgcactctattgtatgtgagaaataaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgagtagcatcagacttccatacacatatgctgcactctattgtatgtgagaaataaag 320

                                                                       
Query: 121 gagacaagccattttccatgcaatagaatcagcacatgggcatcactcatgcatttattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagacaagccattttccatgcaatagaatcagcacatgggcatcactcatgcatttattc 380

                                                                       
Query: 181 tccttaagttctttttctttagttccattgaactatttctttgtgtattcttcaaactct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccttaagttctttttctttagttccattgaactatttctttgtgtattcttcaaactct 440

                                                                       
Query: 241 ttgaattctttgacaaagtttatgaatgttctattaaattctgtgtcatgggattcatgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgaattctttgacaaagtttatgaatgttctattaaattctgtgtcatgggattcatgt 500

                                                                       
Query: 301 aggtagttcttattggcaaacatttctacagaactagtgagctttggagaggcaatactg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggtagttcttattggcaaacatttctacagaactagtgagctttggagaggcaatactg 560

                                                                       
Query: 361 acttgatctttcatgttgcatatatttttgcaaggagatctgtgcatgtgggtttgttaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acttgatctttcatgttgcatatatttttgcaaggagatctgtgcatgtgggtttgttaa 620

                                    
Query: 421 gttttgtgtctagtatggagagagt 445
           |||||||||||||||||||||||||
Sbjct: 621 gttttgtgtctagtatggagagagt 645


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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