BAC Information

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BAC

Clone NameMSMg01-370D08
Chromosome8 (Build37)
Map Location 34,791,360 - 34,947,245
singlet/doubletdoublet
Overlap geneGsr, Gtf2e2, Rbpms
Upstream geneLOC100042715, LOC628408, EG628412, Wrn, Purg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6
Downstream geneLOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159, LOC666746, Dusp4, LOC675578, Tnks
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370D08.T7 (MSMg01no370_d08.b1)MSMg01-370D08.TJ (MSMg01no370_d08.g1)
ACCAG477010AG477011
length778827
length of high quality
(start - end)		432 (42 - 473)156 (73 - 228)
definitionCHROMAT_FILE: MSMg01no370_d08.b1 PHD_FILE: MSMg01no370_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:11 2005CHROMAT_FILE: MSMg01no370_d08.g1 PHD_FILE: MSMg01no370_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,791,360 - 34,791,787)(34,947,090 - 34,947,245)
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGGAAGTTGAGTTCAACTGCTGCCTGGGCCACCCAAATGCCAGGATTAC
CGTCATTAGCCACCATGCCTGACTTAAACCGGCTTTCTTAAATTGGCCTT
TGATCATGCTACAAGGATTAATAGAACTGAATAATGACCAAGGAGAAGTC
CCCAGCCCTGAAGATAATGGTTCTGTTAGGTTTCCATATGGAAATTGGGA
GGAGTTGAGGACTAGGCTCAGCTATGTATTAGCCGACTGGGATACAGAGA
CTGTCTCTAAAAAAAAAAATGAATAAATGAAAACAGGACACAAGGAATTT
AAATGCAAATAACATCTTTCTTCTATGAGGGAAATTCTGTTTTGTTCTGA
TTGTGAATGCGGACTTGCTGTGTAGTTCTGGATGCCCTGGAGCTCGCACC
AGGCTGCCGCTGCTTTCACAGGCTGGAATCACAGGTGCACGTCGCCGTGC
TGCTCATAACGGTTAACGGTTGTGGAGGTTGATCACATGCGCTTATGTAT
ACCTGGTGAACCGTTGCTTTTTAACGCCGTTCCTCTTCTTCTTTATCACA
TTTTCCCCCTTTTTTTCTCCTTTTTTCCCTTTCTTTCCCTCTGGTTTCCC
ATTTTTTTCTGCTTTTTGATTACTCCTTCCTATCCCTCTCTTTATATTAG
CCTTCTATTCATGTCTCCTCCATTTTATCTTACACTGTCCTTAACCTCTT
TTGTACTCCCTCCATTCACTCCCTTCCG

TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGACGTTCAACCCCAAGACCTAAGGACA
AATGCTATAGGGCCTAGAGGCTTGTCATCTCTCCTCGGGTTGATACAGGC
TCAGGACTAAAGGATGCTTCAAAGAAGGTTGGTGGGGGTTAGTGTAGGAA
AGAACTTTGTGAATTACGTGCTGCTGCTGCGTCTGATGAGCTCTGGTGTG
ATTGCACAGTTTCTTCTGGAGGATCTACGGTTACTTTTCTTTTTATTTTC
CGCAGTAGTCCTTTTTTGCTTTTTTTTTTCTCCCCTTATCATCCCTATTT
TTTTCCTTCCTTTTCCCCTTTTTTCTTATTTTTCTTTTGTATTTCCTTCT
TATTCTATCTTTCTCCTCCCCCCTTATTTTTTTTTTTTCCTTTTTTCCTT
ATTCTTCGTCGTTTTTCTCTCTCATTCTCCCTTTTCTCTTCTTTTTTTTT
TCTTCTTTTATTTTCTCTCCCGTCTTTTTCTTCTTAGCTATTTATTTTTT
TTCTCTTCCTCTTTATTTTTATCTCTCTTATTTTTTTGTATTCCCTTTTT
CATTCGCCTTTTTTCCTCCCTATTTTCCTTTCCTTTCTTCTTTTTTTTAT
CTTCGCTTTTTCTCTTTTTTTTTTCTTCCTCCCCTCTTTTTTCTCTTCTT
TTTTATTTGTTTCTTTTTATTCTCCTTTTCCTTTTTCCTGTTTCTTTTTT
TTTTCCCTTTTCTTCCCCTTTTTTCACTCTCTATTTTACTCCCTCCTATT
CTTAATTATTTTTTGTACTCCTCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_d08.b1 MSMg01no370_d08.b1 CHROMAT_FILE:
MSMg01no370_d08.b1 PHD_FILE: MSMg01no370_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:11 2005
         (432 letters)



>mm_chr8_34791156_34791987
          Length = 832

 Score =  828 bits (428), Expect = 0.0
 Identities = 428/428 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaggaagttgagttcaactgctgcctgggccacccaaatgccaggattaccgtca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggaagttgagttcaactgctgcctgggccacccaaatgccaggattaccgtca 264

                                                                       
Query: 65  ttagccaccatgcctgacttaaaccggctttcttaaattggcctttgatcatgctacaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttagccaccatgcctgacttaaaccggctttcttaaattggcctttgatcatgctacaag 324

                                                                       
Query: 125 gattaatagaactgaataatgaccaaggagaagtccccagccctgaagataatggttctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gattaatagaactgaataatgaccaaggagaagtccccagccctgaagataatggttctg 384

                                                                       
Query: 185 ttaggtttccatatggaaattgggaggagttgaggactaggctcagctatgtattagccg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttaggtttccatatggaaattgggaggagttgaggactaggctcagctatgtattagccg 444

                                                                       
Query: 245 actgggatacagagactgtctctaaaaaaaaaaatgaataaatgaaaacaggacacaagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 actgggatacagagactgtctctaaaaaaaaaaatgaataaatgaaaacaggacacaagg 504

                                                                       
Query: 305 aatttaaatgcaaataacatctttcttctatgagggaaattctgttttgttctgattgtg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aatttaaatgcaaataacatctttcttctatgagggaaattctgttttgttctgattgtg 564

                                                                       
Query: 365 aatgcggacttgctgtgtagttctggatgccctggagctcgcaccaggctgccgctgctt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatgcggacttgctgtgtagttctggatgccctggagctcgcaccaggctgccgctgctt 624

                   
Query: 425 tcacaggc 432
           ||||||||
Sbjct: 625 tcacaggc 632


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space:   348129
Effective search space used:   348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no370_d08.g1 MSMg01no370_d08.g1 CHROMAT_FILE:
MSMg01no370_d08.g1 PHD_FILE: MSMg01no370_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:11 2005
         (156 letters)



>mm_chr8_34946890_34947445
          Length = 556

 Score =  302 bits (156), Expect = 8e-87
 Identities = 156/156 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agacgttcaaccccaagacctaaggacaaatgctatagggcctagaggcttgtcatctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 agacgttcaaccccaagacctaaggacaaatgctatagggcctagaggcttgtcatctct 297

                                                                       
Query: 61  cctcgggttgatacaggctcaggactaaaggatgcttcaaagaaggttggtgggggttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 cctcgggttgatacaggctcaggactaaaggatgcttcaaagaaggttggtgggggttag 237

                                               
Query: 121 tgtaggaaagaactttgtgaattacgtgctgctgct 156
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 tgtaggaaagaactttgtgaattacgtgctgctgct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 156
Length of database: 556
Length adjustment: 8
Effective length of query: 148
Effective length of database: 548
Effective search space:    81104
Effective search space used:    81104
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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