BAC Information

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BAC

Clone NameMSMg01-370L04
Chromosome8 (Build37)
Map Location 92,521,815 - 92,522,360
singlet/doubletsinglet
Overlap genenone
Upstream geneSall1, LOC100041089, EG625801, EG384862
Downstream geneTox3, LOC100041133, Chd9, LOC100041156, EG626231
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370L04.T7 (MSMg01no370_l04.b1)MSMg01-370L04.TJ (MSMg01no370_l04.g1)
ACCAG477384AG477385
length769755
length of high quality
(start - end)
55 (112 - 166)546 (71 - 616)
definitionCHROMAT_FILE: MSMg01no370_l04.b1 PHD_FILE: MSMg01no370_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:50 2005CHROMAT_FILE: MSMg01no370_l04.g1 PHD_FILE: MSMg01no370_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCCCCNNNNCATACCACTCCTATACTCACAGATCCGCGAAATTCAA
AGGCTCAAAAATGAAACTAACGCANTGAGAACTGAAANCAAGCGATGGTG
AACGTCGTAAGATCCATGTAACTTCAACACCTAAATCCAACCATTCCTGA
ACGCATTGATCTTTACTTTCACTACTGACCCACCCACCAACCACCCTCGC
GCCTGTAAAAATAATATANNNNNNACAANNAAAATTGACTTTTGCTTCTC
AAAAACACGANNTGTGACGGGGGGAGCCCCCCCTTNAAACTGANCGCAAG
CCAAGAAGAAAAAAGGGCGGGGAAAATTCGGTTCAGAGGGACCCTTTAAT
CTAATAAAANNNNACCCCCCCCCCCCTAACTCAAAAAAAACCAAAAAATT
TAAAGGGGTGTTCCCCCTATACCCNNNNNTCCATTAAATTTTNCTTCTCC
ACCAACCACAGTGGGGGGGGGGGGGGCCCACCNAACNCNNCAAACACCCC
AAAAAAAAAAAACATTCTTCCTCTCCCCCCCTTTTCATAACCCACTACTA
AAAAATTTCCCCNCACCAAACATGGTGGGGGGGGGCGGGGCCCAAACAAC
CATTCCCCCTTTCCCCACCCTTCCCCCCCTTCCTATAACAAAAAAACAAC
CAACCCCACATTTNCCCNTCTCCCTCTCCCCCTCCTTCCCCTCCCCTCTC
TTCCTCTCTCTCCTCNCCCCCCTCCCCTTACTTCTTCTCTACCTTTTTTT
TGTGGGGAGGGGTGGGGGA
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGGTTAGGCCAGATAGAAGGCCAGGGTTGA
AGCCATCTGAGGCACAATCCCATACTGCATCACCAGTCTTCTTTGGCTTA
CAACACAGAAGAATCTACCTCCTCCGAGGTAGCCAGGATTTTCTGAAACA
GTACTCTTTGCCGTCAATGTTATCTGTGCTTGACCATCGTTCTAACCTCA
AGCTTATAAGCTTCTCTCCCTGGCTCTTCCTAAAAGCCCAATACTCTTCT
CTTAGCATCATTAAGCTGATGAGGAGACACTCGGAGACAAAAATAAACAG
TGACATCTCAAATCTAGTAGCTATTTTGAGAGAGTCAGGATTCACATTTC
CCTAACACTTAAACCTAACATACCTGTTTTCTGCAGTAACTAGTGTCTAC
TCCATCATAATTTGGTAGCCATAGTGACATCCCTCACCAAGAAAACTTAG
TAACTTCATATGTCAGGCGCTATTAGGGACCCCTGCAACATCCCCTCTCT
GCCATCCCACTATGAAGAGTTCAGAGATAAGCCAAGCAGAAGACAGATGT
CTCAAGCTTGAGCTCACCCCAAATAGCTTCCTCTTTGAGCAGAAACCCCT
AGATATTCTCTGAGCAGCTGGACAGACAGTGGTGACCATCTTCGGCACCC
TGGTGTGATAGCTGAATCAAAATACACTGAAATCTATACCCACTGAATGG
GGGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_l04.g1 MSMg01no370_l04.g1 CHROMAT_FILE:
MSMg01no370_l04.g1 PHD_FILE: MSMg01no370_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:50 2005
         (546 letters)



>mm_chr8_92521615_92522560
          Length = 946

 Score = 1056 bits (546), Expect = 0.0
 Identities = 546/546 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggttaggccagatagaaggccagggttgaagccatctgaggcacaatcccatactgcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggttaggccagatagaaggccagggttgaagccatctgaggcacaatcccatactgcat 260

                                                                       
Query: 61  caccagtcttctttggcttacaacacagaagaatctacctcctccgaggtagccaggatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caccagtcttctttggcttacaacacagaagaatctacctcctccgaggtagccaggatt 320

                                                                       
Query: 121 ttctgaaacagtactctttgccgtcaatgttatctgtgcttgaccatcgttctaacctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctgaaacagtactctttgccgtcaatgttatctgtgcttgaccatcgttctaacctca 380

                                                                       
Query: 181 agcttataagcttctctccctggctcttcctaaaagcccaatactcttctcttagcatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcttataagcttctctccctggctcttcctaaaagcccaatactcttctcttagcatca 440

                                                                       
Query: 241 ttaagctgatgaggagacactcggagacaaaaataaacagtgacatctcaaatctagtag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaagctgatgaggagacactcggagacaaaaataaacagtgacatctcaaatctagtag 500

                                                                       
Query: 301 ctattttgagagagtcaggattcacatttccctaacacttaaacctaacatacctgtttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctattttgagagagtcaggattcacatttccctaacacttaaacctaacatacctgtttt 560

                                                                       
Query: 361 ctgcagtaactagtgtctactccatcataatttggtagccatagtgacatccctcaccaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgcagtaactagtgtctactccatcataatttggtagccatagtgacatccctcaccaa 620

                                                                       
Query: 421 gaaaacttagtaacttcatatgtcaggcgctattagggacccctgcaacatcccctctct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaaacttagtaacttcatatgtcaggcgctattagggacccctgcaacatcccctctct 680

                                                                       
Query: 481 gccatcccactatgaagagttcagagataagccaagcagaagacagatgtctcaagcttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gccatcccactatgaagagttcagagataagccaagcagaagacagatgtctcaagcttg 740

                 
Query: 541 agctca 546
           ||||||
Sbjct: 741 agctca 746


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space:   501696
Effective search space used:   501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)