NNNCCCATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTGTCTAAAGGAAATGCATG
GACAAAGAGTGGAGCAGAAACTGAAGGAAAGGCTATCCAGAGACTGCCCC
ACCTAGTGGTCCATCCCATCTGCAGACACTAAACCCAGACACTACTGATG
ATGTGTTTCAATTCTTGCCCTGGCTTGGTATCACCTTCCTGACTTAGGAA
TTGCTCCAGTCATGGTTTTACATCGATTCTGGAGGCATAAACCCCGGGGG
ATCTGTGTCTGTTCCTACATCCAGTATTACTCTACCTGCCCTCAATCCTG
ACCATGCTGGGGGCTATAAATTGGCAGCTGCAATGGTCTTTGGGACTGAA
AATAAATTTTGACTTTACCTTTCTTCAAGCCATCGGCATCTACCTCATCT
ACAGACAGCCTGTAGGAAGACTGACCTGGGATGTGGCTGTACAATGGTTG
GTACTAGAATAAACCTCATCTCTGATTGAAGCATGAATTTGCCCCTTCCA
AATCTGTGTCATTTTAATTGAGGTCAGGACTTTTGATATGAAATGAAATC
TCCTATTTTCTGGTTGTTTTTGGACCAAGATCATGTGGAAATGTTTCTAA
TTATTCTTTTGCCTTTCTTTCCACAAAATGGGGTTGGAACATCTCTATAA
CGGGGATTGGGTCAACCCTTTCCTGATCTAAAAAAAGCCCTCAAGGAAAA
GGGGGAAGGCCCTCCCCCTTGAAAT

NNNNNCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGGATC
CGCGGAATTCAAGGCGCATACCTAAACATAATAAACGCAATCTACAGCAA
ACAAGTAGCCAACATCAAACTAAATGAAGAGAAACTTGAAGCAATCCCAC
TAAAATTAGGCACTAGACCAGGACGCCCACTTTCTCCCTACATATTCAAT
ATATTACTTAAGTCCTAGACAGTGCAATTAGACAACAAAAGGAGATCAGA
GGAATACAAACTGGGAAGGAAGAAGGCAAAATATCACTATTTGCAGATAA
TATGATAGTATACATAAGTGATCCCAAAAATTCCACCAGATGACTCCTAA
GCCTGATAAACAGCTTCAGTGAAGTAGCTTGATATAAAATTAACTCAAAC
AAATCAGTGGCCTTTCTCTACCCAAAGGATAAACAGGCTGAGAAAGAAGT
TAGGGAAACAACACCTTTCACAATAGTCACAAATAATATAAAATACCTTG
GTGTGACTCTAACTAAGGAACTGAAAGCTCTGTATGATAAGAACTTAGAG
TCTCTGAAGAAATAAATCAAAGATCTCAGAAGATTGAAAGATCTCCTGGC
CCTGAGGTGGGCGGGACCAAATAGAAAAAAGGGTATCTTGGCGAAGGCAT
CTACGGATTCATGGGATCATCCCCCTCAAATTCCAATCTCATTCTTCCCA
AGTAGTTGAAAGGGAAATTTGCAAAAAAAAAAAAATTCCCCCGGAAAAGA
AATTTTCTCCATCCCCTCCCCAAA

Query= MSMg01no371_o24.b1 MSMg01no371_o24.b1 CHROMAT_FILE:
MSMg01no371_o24.b1 PHD_FILE: MSMg01no371_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:34 2005
         (480 letters)



>mm_chr8_62740612_62741496
          Length = 885

 Score =  839 bits (434), Expect = 0.0
 Identities = 471/486 (96%), Gaps = 7/486 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttctgtctaaaggaaatgcatggacaaagagtggagcagaaactgaaggaaaggctatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 cttctgtctaaaggaaatgcatggacaaagagtggagcagaaactgaaggaaaggctatc 767

                                                                       
Query: 61  cagagactgccccacctagtggtccatcccatctgcagacactaaacccagacactactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 cagagactgccccacctagtggtccatcccatctgcagacactaaacccagacactactg 707

                                                                       
Query: 121 atgatgtgtttcaattcttgccctggcttggtatcaccttcctgacttaggaattgctcc 180
           |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 706 atgatgtgtttcaattcttgccctggtttggtatcatcttcctgacttaggaattgctcc 647

                                                                       
Query: 181 agtcatggttttacatcgattctggaggcataaaccccgggggatctgtgtctgttccta 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 646 agtcatggttttacatcgattctggaggcataaaccctgggggatctgtgtctgttccta 587

                                                                       
Query: 241 catccagtattactctacctgccctcaatcctgaccatgctgggggctataaattggcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 catccagtattactctacctgccctcaatcctgaccatgctgggggctataaattggcag 527

                                                                       
Query: 301 ctgcaatggtctttgggactgaaaataaattttgactttacctttcttcaagccatcggc 360
           |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ctgcaacggtctttgagactgaaaataaattttgactttacctttcttcaagccatcggc 467

                                                                       
Query: 361 atctacctca----t--ctacagacagcctgtaggaagactgacctgggatgtggctgta 414
           ||||||||||    |  ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 466 atctacctcaaaagtgacta-agacagcctgtaggaagactgacctgggatgtggctgta 408

                                                                       
Query: 415 caatggttggtactagaataaacctcatctctgattgaagcatgaatttgccccttccaa 474
           |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 407 caatggttggtactggaataaacctcatctctgattgaagcataaatttgccccttcaaa 348

                 
Query: 475 atctgt 480
           ||||||
Sbjct: 347 atctgt 342


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 885
Length adjustment: 10
Effective length of query: 470
Effective length of database: 875
Effective search space:   411250
Effective search space used:   411250
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)