BAC Information

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BAC

Clone NameMSMg01-372E21
Chromosome8 (Build37)
Map Location 43,209,985 - 43,210,504
singlet/doubletsinglet
Overlap genenone
Upstream geneMtus1, Fgl1, Pcm1, Asah1, Frg1, LOC100039376, Gm1815, LOC671994, Zfp353
Downstream geneEG620772, LOC628212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372E21.T7 (MSMg01no372_e21.b1)MSMg01-372E21.TJ (MSMg01no372_e21.g1)
ACCAG478599AG478600
length778795
length of high quality
(start - end)		520 (59 - 578)429 (66 - 494)
definitionCHROMAT_FILE: MSMg01no372_e21.b1 PHD_FILE: MSMg01no372_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:01 2005CHROMAT_FILE: MSMg01no372_e21.g1 PHD_FILE: MSMg01no372_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAAC
AATTGACGGATTTTATAGTTTAATTCTTGGACTAAAAAACCAGAGCTTTA
TGGTATGATATGCAGCTATTTTCCCTCTAAGCTACATCTCCACCACGGAA
TGGAATTTTTAGAATCTATAGATAGCTATCTTTATTGCAGTGGGTCATTT
GTCAATATTGTTTTCCTACAAACACAGAAGAAACCATAGTTGAATGAGAA
GAAAACGATGAATTGCCTGTTACAGGGAGTCATTATCTTTAGCTGTTATA
GTATTCAGATTGTGAATTTCTTGTGTGTGTGTGTACATATTTAGATATGT
GGTACTCAGTGATGGTCAAAATAATTATTGTCTGTAATAAACTTCATCAA
AACCAGTTTCTGGCTTTTTAATAGTCTGAGTATATTTAAATTTAATGCAT
TAATAATAAAAGATATTTATGCCTTAGTTCTTTTTATTTCTTTAATTCTC
CATTGACTTTAGTTTACTATATCTATAATTTGACGAGATTGGCTAGAAAT
CTTAACATTCAAAGCTACTTGAAACTCAGTTAAGGTTGATCTAAGTTGTA
TCCTTACCTGGAAAAAAATCAGATCTATGTGATTTTAAACAATGTTGCTA
TACTTTTTTGAGGCCTAGTTATGATTACTGATAAATATTTGGCTTTTCGA
AAATTTTCCAAAAAGGCCGAAAGATTGGGGAATTTGGTTAAGGAATCCCT
TTTTTAAACCACGGTAAAATATAACCAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCTTGGATTTCCTTGACCAGTAAGGTGAAAATATC
TAGTAACTGGCATTTTAAGGTTTTTATTAGACACAATATTGATGTGGAGA
AAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCAC
TCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATATTACTACTG
GAAGATCCAGCAATACCTCTTCTGGGCATATATCCAGAAGATGCCCCAAC
CGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAA
TAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAAGAATGGATA
CAGAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAA
GAATGGATTTATGAAATTCCTAGGCAAATGGATGGATCTGGAGGGCTTCA
TCCTGAGTGAGGTAACCCAATCACAAAGGAACTCTCACAATATGTACTCA
CTGATAATGGGATATTATCCCAGAAACTTATGATACCCAAGATATAAAAA
TACATTTGCTTAACACATTATAGCTCCTTAAAACGAAAAACAAAATGGGG
GAACCCTTGTCCTTTCTTTTAAAAGGAAACTTAAACCCCCTGGCGTGGAG
CGATCCCAATTTAAACCCTCTTTTTGCCGCCCATAAGCTGTATTACTCCC
CTTGCCCCGCCCCTATTTTTATATTTTTTTCCCTCGCTCCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_e21.b1 MSMg01no372_e21.b1 CHROMAT_FILE:
MSMg01no372_e21.b1 PHD_FILE: MSMg01no372_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:01 2005
         (520 letters)



>mm_chr8_43209785_43210704
          Length = 920

 Score = 1006 bits (520), Expect = 0.0
 Identities = 520/520 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gattttatagtttaattcttggactaaaaaaccagagctttatggtatgatatgcagcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 gattttatagtttaattcttggactaaaaaaccagagctttatggtatgatatgcagcta 661

                                                                       
Query: 61  ttttccctctaagctacatctccaccacggaatggaatttttagaatctatagatagcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ttttccctctaagctacatctccaccacggaatggaatttttagaatctatagatagcta 601

                                                                       
Query: 121 tctttattgcagtgggtcatttgtcaatattgttttcctacaaacacagaagaaaccata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tctttattgcagtgggtcatttgtcaatattgttttcctacaaacacagaagaaaccata 541

                                                                       
Query: 181 gttgaatgagaagaaaacgatgaattgcctgttacagggagtcattatctttagctgtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gttgaatgagaagaaaacgatgaattgcctgttacagggagtcattatctttagctgtta 481

                                                                       
Query: 241 tagtattcagattgtgaatttcttgtgtgtgtgtgtacatatttagatatgtggtactca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tagtattcagattgtgaatttcttgtgtgtgtgtgtacatatttagatatgtggtactca 421

                                                                       
Query: 301 gtgatggtcaaaataattattgtctgtaataaacttcatcaaaaccagtttctggctttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gtgatggtcaaaataattattgtctgtaataaacttcatcaaaaccagtttctggctttt 361

                                                                       
Query: 361 taatagtctgagtatatttaaatttaatgcattaataataaaagatatttatgccttagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 taatagtctgagtatatttaaatttaatgcattaataataaaagatatttatgccttagt 301

                                                                       
Query: 421 tctttttatttctttaattctccattgactttagtttactatatctataatttgacgaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tctttttatttctttaattctccattgactttagtttactatatctataatttgacgaga 241

                                                   
Query: 481 ttggctagaaatcttaacattcaaagctacttgaaactca 520
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ttggctagaaatcttaacattcaaagctacttgaaactca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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