BAC Information

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BAC

Clone NameMSMg01-372H07
Chromosome8 (Build37)
Map Location 64,435,277 - 64,435,745
singlet/doubletsinglet
Overlap geneBC013672
Upstream geneClcn3, B230317F23Rik, Nek1, Sh3rf1, EG664975, Cbr4, Palld, LOC100040872
Downstream geneAnxa10, LOC100040775, LOC384830, LOC100040804, LOC665267, Spock3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372H07.T7 (MSMg01no372_h07.b1)MSMg01-372H07.TJ (MSMg01no372_h07.g1)
ACCAG478715AG478716
length746770
length of high quality
(start - end)
541 (42 - 582)469 (73 - 541)
definitionCHROMAT_FILE: MSMg01no372_h07.b1 PHD_FILE: MSMg01no372_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:12 2005CHROMAT_FILE: MSMg01no372_h07.g1 PHD_FILE: MSMg01no372_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAGAGTGTCCGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTC
CTCTTTCTCCACATCCACGCCAGCATCTGCTGTCACCTGAATTTTTCATC
TTAGCCATTCTGACTGGTGTGAGGTGGAATCTTAGGGTTGTTTTGAATTG
TATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAAATGCTTCTATG
CCATTCGGTATTCCTCAGGGGAGAATTCTTTGTTCAGCTTTGAGCCCCAT
TTTTTAATAGGGTTATTTGATTTTCTGGAGCCCACCTTCTTGAGTTCTTT
ATATATATTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCC
TTTCCCAATCTGTTGGTGGTCTTTTTGTCTTGTTGAGTGTGTCTTTTGCC
TTGCAGCTTTGCAACTTTATGTGGTCCCATTTATCAATTCTCAATCTTAC
TGGACAAGCCATTGCTGTTCTATTCAGGAACTTTTGCCCTGTACCCATAT
CTTCGAGACTTTTCCCTACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGG
TTTATGTGGAGTTCCTTAATCCACTTANATTTGACCTTATTAAAAGAACA
TAGGATGGTACCAATTGTATTTCTTCTACCTGATAACAACCTCGTTGTTC
CCATCATCCTTTGTTTAAAATGCTGTCTTTTTTCCACTGGATGGCG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTATTTCTAGCAACTGAAGATTTTCTTTG
TGTAATAGTAGTGGATGAAAGACACTCAGATTCTCTTACATAATGATAGT
TCCACTTAAAACAATAGAATGGGAGAAGCCAGCAAGGTAACTCTCGGGAA
GCTGAGACCCACCTATGCCAGTTCAGAGTCTACTGTGATGCCATACTCAG
CATCTGCTTTAGATAGTAACAAAAACAACCCATAGCCGTGCGTTAGAGGA
GAAGAAAGAGAAGTTGAATAATAAAACGAAGCCAGCAATCATTTTAGAAA
GCCTTTGCCCAAATCACTGCAAGCACAGATGTAAAGATGGTTGTGTCTTC
CCTGGTGGCAGGCACAGGAGCCAAGGCCAGAGCCAGGTGGTGGTGGAACT
CAGTCTTCACACAGCCCAAGCGAATAAGAACATTAAGTCAAAGGTTAGTG
TCCGCTAGACCAGCCTGTAATGAACAGAGGTGAAAGGAGTCACACTAGGT
CTGGAGGATAATAAAGTACTCTTGAAATCTCTACCTTGTAATACAGGAGG
AAGATTGCATTGGGGATCTTTGGAATGGAATAAACTTCTAGTTTGGGAAC
CTTTTTCAGTGGTAAAACAAAAAAGGAGGGCCAATCCTCCCGCTCCTAAT
ATAGAATCCGGTCTGAGAAAAAATTCCCCGGCTCCCGGGTTAAATATTTT
CGGGAAGGGGTATGACAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_h07.g1 MSMg01no372_h07.g1 CHROMAT_FILE:
MSMg01no372_h07.g1 PHD_FILE: MSMg01no372_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:12 2005
         (469 letters)



>mm_chr8_64435077_64435945
          Length = 869

 Score =  845 bits (437), Expect = 0.0
 Identities = 461/469 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatttctagcaactgaagattttctttgtgtaatagtagtggatgaaagacactcagatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatttctagcaactgaagattttctttgtgtaatagtagtggatgaaagacactcagatt 260

                                                                       
Query: 61  ctcttacataatgatagttccacttaaaacaatagaatgggagaagccagcaaggtaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 ctcttacataatgatagttccacttaaaacaatagaatgggagaagccagcaatgtaact 320

                                                                       
Query: 121 ctcgggaagctgagacccacctatgccagttcagagtctactgtgatgccatactcagca 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggggaagctgagacccacctatgccagttcagagtctactgtgatgccatactcagca 380

                                                                       
Query: 181 tctgctttagatagtaacaaaaacaacccatagccgtgcgttagaggagaagaaagagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgctttagatagtaacaaaaacaacccatagccgtgcgttagaggagaagaaagagaa 440

                                                                       
Query: 241 gttgaataataaaacgaagccagcaatcattttagaaagcctttgcccaaatcactgcaa 300
           | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctgaagaataaaacgaagccagcaatcattttagaaagcctttgcccaaatcactgcaa 500

                                                                       
Query: 301 gcacagatgtaaagatggttgtgtcttccctggtggcaggcacaggagccaaggccagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcacagatgtaaagatggttgtgtcttccctggtggcaggcacaggagccaaggccagag 560

                                                                       
Query: 361 ccaggtggtggtggaactcagtcttcacacagcccaagcgaataagaacattaagtcaaa 420
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 561 ccaggtggtggtggaactcagtcttcacacagcccaagccaataagaacattaattcaaa 620

                                                            
Query: 421 ggttagtgtccgctagaccagcctgtaatgaacagaggtgaaaggagtc 469
           ||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 621 ggttagtgttcgcttgaccagcctgtaatgaacagaggtgaaaggagtc 669


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)