Query= MSMg01no372_m05.b1 MSMg01no372_m05.b1 CHROMAT_FILE:
MSMg01no372_m05.b1 PHD_FILE: MSMg01no372_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:35 2005
(247 letters)
>mm_chr8_67638944_67639590
Length = 647
Score = 404 bits (209), Expect = e-117
Identities = 236/249 (94%), Gaps = 8/249 (3%)
Strand = Plus / Minus
Query: 1 tggcctcaaactcagaaatccacctgttttttcctcccaagttctgggattaaaggcgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 522 tggcctcaaactcagaaatccacctgttttttcctcccaagttctgggattaaaggcatg 463
Query: 61 cgccaccacctcccagcagaaattcgtgacaagtatccatactagttgtgcattaatata 120
||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||
Sbjct: 462 cgccaccacctcccagcagaaattcttgacaagtaaccatactagttttgcattaatata 403
Query: 121 tgcactgtgataaaataaactgtacacaacatccccaaaagtggagaggaagcttt---- 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tgcactgtgataaaataaactgtacacaacatccccaaaagtggagaggaagctttaaac 343
Query: 177 aaattttctaacaattactgtttgctgagtagcagaaagcagtattaatctctatcttta 236
||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aaa----ctaacaattactgattgctgagtagcagaaagcagtattaatctctatcttta 287
Query: 237 aaagttcct 245
|||||||||
Sbjct: 286 aaagttcct 278
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space: 151844
Effective search space used: 151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no372_m05.g1 MSMg01no372_m05.g1 CHROMAT_FILE:
MSMg01no372_m05.g1 PHD_FILE: MSMg01no372_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:35 2005
(459 letters)
>mm_chr15_3660678_3661536
Length = 859
Score = 820 bits (424), Expect = 0.0
Identities = 454/468 (97%), Gaps = 9/468 (1%)
Strand = Plus / Plus
Query: 1 ttggaggggggaccaggaaaagggcaacatttggaatataaataaataaaactttttaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ttggaggggggaccaggaaaagggcaacatttggaatataaataaataaaactttttaaa 251
Query: 61 agatttttgttttttt--gtttttttttt----atagaacagagtttattctctattcat 114
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 252 agatttttgtttttttttgttttttttttttttatagaacagagtttattctctattcat 311
Query: 115 ggggaggggagttgagaggttagtagagacagagaaaggcagagagagagaacagagaag 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ggggaggggagttgagaggttagtagagacagagaaaggcagagagagagaacagagaag 371
Query: 175 taaaggctggccatgagcactgggggg---gggcaaggagggggaagcaggaaggagagg 231
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 372 taaaggctggccatgagcactggggggcgggggcaaggagggggaagcaggaaggagagg 431
Query: 232 acagagcaggagctttaatgctagagagttaaaagttttttaatagtgacattggtgtta 291
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 acagagcaggagcaagaaggctagagagttaaaagttttttaatagtgacattggtgtta 491
Query: 292 ggtacaattctcttggacttggaattatagactcacttctgcccactctcctagtgcctc 351
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 492 ggtacaattctcttggacttggaattatagactcatttctgcccactctcctagtgcctc 551
Query: 352 agcttgaaggtgtctcctctcacctacaatttttgcaatatcttgacacttactttctca 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 agcttgaaggtgtctcctctcacctacaatttttgcaatatcttgacacttactttctca 611
Query: 412 cattctgcccagcttaaggattctgcttctgtatctcttatctccatc 459
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 cattctgcccagcttaaggattctgcttctgtatctcttatctccatc 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space: 381201
Effective search space used: 381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
