BAC Information

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BAC

Clone NameMSMg01-372M07
Chromosome8 (Build37)
Map Location 65,033,213 - 65,033,537
singlet/doubletsinglet
Overlap genenone
Upstream genePalld, LOC100040872, BC013672, Anxa10, LOC100040775, LOC384830, LOC100040804, LOC665267
Downstream geneSpock3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372M07.T7 (MSMg01no372_m07.b1)MSMg01-372M07.TJ (MSMg01no372_m07.g1)
ACCAG478955AG478956
length738758
length of high quality
(start - end)
359 (64 - 422)497 (71 - 567)
definitionCHROMAT_FILE: MSMg01no372_m07.b1 PHD_FILE: MSMg01no372_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:35 2005CHROMAT_FILE: MSMg01no372_m07.g1 PHD_FILE: MSMg01no372_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGAAAATATCGTAATGAATTTCTGTATGTGTGAAATGGAGGCAAGAGTCT
GAGCAAGAACCCAGAGACCTGCCTATAAACACAAAGGAACTGAGCCCAGA
GACCTATAAACACAAAGGAACTGAGCCCAGAGACCTATAAACACAAAGGG
ACCAAATGCAGATTCTCTGACCAGCCAGACAATGTGAACTTTGAGAAAGA
TAGCAAAGTCTTAAGCATTCTTTTTTTTTTTAATTTTAATATGTTTTTTA
TTACCTTTTTTCCTTTTTTACATTTCCAAGGCTATCCCAAAAGTCCCCCA
TACACCCCCCAATTCCCTACCCACCCATTCCCATTTTTTTTGGCCTGACA
TTCCCCTGTACTGGGGCTTATAAAGGTTGTGTGTCCAATGGGACTCTCTC
TCCAGTGACGGCCGACCAGGCCATCTCTTGATACATATGTAGCCAGAGTC
AGGAGCCTCCGGGGTACCGGTTAGCTCATAATGCCGCTCCCTGTACATGC
GCGCATATCCCTCTAAGTTCCGTGGGCACTTTCTCTAGCCCCTCCATTGC
TTAGTTTTGCGCACCCGCCTATAGCTCCTTGGTGCGCTTCCCTTTCTGTG
TTTTTTCCGCTCCATTACCCCCCTCCCCGTACAATTTCCCCCCTTAAACC
CTTTTCTTCTCCTTTTCGCCCCTGTCTTTTGATGTCGG
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTGGTCTTATCATGTTTCCCATCATCCTG
AAGCAGCTGGTCTGATAGAAAGATGGAATGGCCTTTTGAAGACACAGTTT
CAGTGCCAATTTGGTGGCAATAGCATGGAGGGCTGGGGCAGAGTTCTTCA
GAAGGCAGTATATGCTTTGAATCAGCGTTTGATATATGGTAAAATTTTCC
CTATAGCCAGGATCCATAGGTCCAGGAATCAAGGTGTGGAAAAGGAAATA
ATTCCACTCACTGTCATTCCTAGTGACCTTCTAGGAAAATTTTTGCTTCC
TGTCCCCATAACTCTAGGTTCTGCTGGTCTAGAAGTTTTGGTTCCAGACG
GGAATGCTCCTAACAGGAGCCACAACAAACATTCCATTGAACTGGAAGCT
CAGACTTCCTTCTGGTCATTTTGGTCTAAGAAAGGAATAACAGTGTTAGG
AGGGGAGATAGATCCAGATTACCATGGGGAAATTGGATTACCTCTCCACA
ATGGAGGTAAGCAAGATTATGTCAGGAATACAGGAGATCCCTTAGGGTGT
CTCTTAATACTAGCATGTCCTGTGATTAACGCCGTGAAAAACTACAACAG
CCTAATCCAATCGGGATGACCAAGGACTCCCAACCCTTCCTAACGAAGTC
CACCCCTCCAAAAAAGGCCCACACCTGCCGAAGTGCTTGCTTTGGGGGAA
GAAATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_m07.b1 MSMg01no372_m07.b1 CHROMAT_FILE:
MSMg01no372_m07.b1 PHD_FILE: MSMg01no372_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:35 2005
         (359 letters)



>mm_chr8_65033070_65033828
          Length = 759

 Score =  437 bits (226), Expect = e-127
 Identities = 311/360 (86%), Gaps = 36/360 (10%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaatttctgtatgtgtgaaatggaggcaagagtctgagcaagaacccagagacctgcc 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  
Sbjct: 468 atgaatttctgtatgtgtgaaatggaggcaagagtctgagtaagaacccagagacctg-- 411

                                                                       
Query: 61  tataaacacaaaggaactgagcccagagacctataaacacaaaggaactgagcccagaga 120
                                        |||||||||||||||||||||||||||||||
Sbjct: 410 -----------------------------cctataaacacaaaggaactgagcccagaga 380

                                                                       
Query: 121 cctataaacacaaagggaccaaatgcagattctctgaccagccagacaatgtgaactttg 180
           |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 379 cctataaacacaaagggaccaaattcagattctctgaccagccagagaatgtgaactttg 320

                                                                       
Query: 181 agaaagatagcaaagtcttaagcattctttttttttttaattttaatatgttttttatta 240
           ||||||||||||||| ||||||||||||||||||||  |||||||||||| |||||||||
Sbjct: 319 agaaagatagcaaagacttaagcattcttttttttt--aattttaatatgctttttatta 262

                                                                       
Query: 241 ccttttttccttttttacatttccaaggctatcccaaaagtcccccataca-ccccccaa 299
           | | |||||||   |||||||||||| |||||||||||||||||||||  | ||||||||
Sbjct: 261 cgtattttcctcaattacatttccaatgctatcccaaaagtcccccatt-atccccccaa 203

                                                                       
Query: 300 ttccctacccacccattcccattttttttggcctgacattcccctgtactggggcttata 359
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 202 ttccctacccacccattcccattttttt-ggcctgacattcccctgtactggggcatata 144


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)