Query= MSMg01no373_d10.b1 MSMg01no373_d10.b1 CHROMAT_FILE:
MSMg01no373_d10.b1 PHD_FILE: MSMg01no373_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:08 2005
(526 letters)
>mm_chr8_34358357_34359282
Length = 926
Score = 996 bits (515), Expect = 0.0
Identities = 515/515 (100%)
Strand = Plus / Plus
Query: 12 gaattcactcagctttgcagaaaatgtttgtttttaaggtgaccgttgctttagtccaac 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gaattcactcagctttgcagaaaatgtttgtttttaaggtgaccgttgctttagtccaac 271
Query: 72 agaattttttaaaaatcagatttattgttataacatgctgaccttatatttgtggattta 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 agaattttttaaaaatcagatttattgttataacatgctgaccttatatttgtggattta 331
Query: 132 agagggaaattctctaatgtgccttaacttgaattctggggttggggattggggaacatc 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 agagggaaattctctaatgtgccttaacttgaattctggggttggggattggggaacatc 391
Query: 192 atttcttaaatatttctgtaaggcaagcaggggacagagcttcatggcagagctgaggtt 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 atttcttaaatatttctgtaaggcaagcaggggacagagcttcatggcagagctgaggtt 451
Query: 252 cctcagtgggacaagaacaaagaacaaaggccctttttaatgggagctttgcctgcatgt 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cctcagtgggacaagaacaaagaacaaaggccctttttaatgggagctttgcctgcatgt 511
Query: 312 gtgtctatgcatcatgtgtttgcatggtcccaacagaggtcagaaggggctgtcaagagt 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gtgtctatgcatcatgtgtttgcatggtcccaacagaggtcagaaggggctgtcaagagt 571
Query: 372 ccctggaactggagttacagtaagttgtgggtggcagaaacgccagtcttctggaagaac 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ccctggaactggagttacagtaagttgtgggtggcagaaacgccagtcttctggaagaac 631
Query: 432 agcctggagtcctaactgctgagccatctgtcaagcacggagaagaaacccctccgctgg 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 agcctggagtcctaactgctgagccatctgtcaagcacggagaagaaacccctccgctgg 691
Query: 492 gggctacagagcttggcatgtctggtagggactca 526
|||||||||||||||||||||||||||||||||||
Sbjct: 692 gggctacagagcttggcatgtctggtagggactca 726
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space: 472656
Effective search space used: 472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_d10.g1 MSMg01no373_d10.g1 CHROMAT_FILE:
MSMg01no373_d10.g1 PHD_FILE: MSMg01no373_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:08 2005
(462 letters)
>mm_chr8_34400249_34401110
Length = 862
Score = 878 bits (454), Expect = 0.0
Identities = 460/462 (99%)
Strand = Plus / Minus
Query: 1 cattggttattgactgctcgctggactgagctgttagaattccattggttattgactgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 cattggttattgactgctcgctggactgagctgttagaattccattggttattgactgct 603
Query: 61 cgctggactgagctgttagaattccattggttattgattgctcgctggactgagctgtta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 cgctggactgagctgttagaattccattggttattgattgctcgctggactgagctgtta 543
Query: 121 gaattccattggttattgactgctcgctggactgagctgttagaattccattggttattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gaattccattggttattgactgctcgctggactgagctgttagaattccattggttattg 483
Query: 181 actgctagctggactgagctgttagaattccattggttattgactgctagctggactgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 actgctagctggactgagctgttagaattccattggttattgactgctagctggactgag 423
Query: 241 ctgttataattccattgcttattgactgctcgctggactgagctggcttcttgcaccaaa 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ctgttagaattccattgcttattgactgctcgctggactgagctggcttcttgcaccaaa 363
Query: 301 gcttttgcttcccacgtctgtgccgttatccccgctccctcacccctaacccatcttttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 362 gcttttgcttcccacgtctgtgccgttatccccgctccctcacccctaacccatcctttg 303
Query: 361 cgtgtttcctatgctcttcctttctcctttctgtcaatctcctgggccatcctagaacat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 cgtgtttcctatgctcttcctttctcctttctgtcaatctcctgggccatcctagaacat 243
Query: 421 accctatgagcttattttactgttgtctcttcaatgaggcgt 462
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 accctatgagcttattttactgttgtctcttcaatgaggcgt 201
Score = 221 bits (114), Expect = 1e-61
Identities = 123/126 (97%)
Strand = Plus / Minus
Query: 160 ttagaattccattggttattgactgctagctggactgagctgttagaattccattggtta 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ttagaattccattggttattgactgctagctggactgagctgttagaattccattggtta 654
Query: 220 ttgactgctagctggactgagctgttataattccattgcttattgactgctcgctggact 279
||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 653 ttgactgctcgctggactgagctgttagaattccattggttattgactgctcgctggact 594
Query: 280 gagctg 285
||||||
Sbjct: 593 gagctg 588
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 108
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 4
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space: 385104
Effective search space used: 385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
