Query= MSMg01no373_l18.b1 MSMg01no373_l18.b1 CHROMAT_FILE:
MSMg01no373_l18.b1 PHD_FILE: MSMg01no373_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:45 2005
(527 letters)
>mm_chr8_80936454_80937381
Length = 928
Score = 990 bits (512), Expect = 0.0
Identities = 524/528 (99%), Gaps = 1/528 (0%)
Strand = Plus / Plus
Query: 1 caagtcttgaacttggaatccccctgcctctacatcccaagtgactgagattacaggcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagtcttgaacttggaatccccctgcctctacatcccaagtgactgagattacaggcca 260
Query: 61 aaaccaatagcctgactcttccagttgcaataatctgctttctgtgagtcaagactacaa 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaactaatagcctgactcttccagttgcaataatctgctttctgtgagtcaagactacaa 320
Query: 121 tatatctattctcattaaaagggtgaaggaagttgggtggtggtggctcatgcctttaat 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 tatatctattctcattaaaagggtgaaggaagtcgggtggtggtggctcatgcctttaat 380
Query: 181 cccagcacttggaagacaggcagatttctgagtttgaggccagcccggtctacaaagtga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccagcacttggaagacaggcagatttctgagtttgaggccagcccggtctacaaagtga 440
Query: 241 gttccaggacagccaggactacatggagaaaccctgtctcaaaaaaaaaaaaaggatgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttccaggacagccaggactacatggagaaaccctgtctcaaaaaaaaaaaaaggatgaa 500
Query: 301 ggatagagttttcatttttctttcatttttctgtttagctgaccatgtttgctactaatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggatagagttttcatttttctttcatttttctgtttagctgaccatgtttgctactaatg 560
Query: 361 tgagtaaagttcttaagcaaatgtaccaaaaactacattgattaaccaaaaaaaa-tatt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 tgagtaaagttcttaagcaaatgtaccaaaaactacattgattaaccaaaaaaaaatatt 620
Query: 420 gattgaaatggaaatatgtgctaagttaagaagcaaactatatgtctactctagatcagg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gattgaaatggaaatatgtgctaagttaagaagcaaactatatgtctactctagatcagg 680
Query: 480 gccaccttaaaagacacagaatttctgggggtctgtcacttgtattta 527
||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 681 gccaccttaaaagacacagaattactgggggtctgtcacttgtattta 728
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 928
Length adjustment: 10
Effective length of query: 517
Effective length of database: 918
Effective search space: 474606
Effective search space used: 474606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_l18.g1 MSMg01no373_l18.g1 CHROMAT_FILE:
MSMg01no373_l18.g1 PHD_FILE: MSMg01no373_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:45 2005
(537 letters)
>mm_chr8_81060927_81061863
Length = 937
Score = 714 bits (369), Expect = 0.0
Identities = 461/537 (85%), Gaps = 70/537 (13%)
Strand = Plus / Minus
Query: 1 ttctgcctgctcgggagaatggaagatagactgaaaggcattggagttaagtgagaaaag 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 530 ttctgcctgctcgggagaatggaagatagactgaaaggcattggacttaagtgagaaaag 471
Query: 61 cctgaggtagattaaaaaccttgagaaagtatatttaaccacatttacaacggcttacat 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 470 cctgaggtagattaaaaaccttgagaacgtatatttaaccacatttacaacggcttacat 411
Query: 121 tggaaccagtcagctctttctggtgctcctaagaatccaaccagggcctgaaggtgtgct 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 410 tggaaccagtcagctctttctggtgctcctaagaatccaatcagggcctgaaggtgtgct 351
Query: 181 aaagctaaagctaaaggcgaggagggcagagacgaggcagaaagccgtgtgctgctacca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 aaagctaaagctaaaggcgaggagggcagagacgaggcagaaagccgtgtgctgctacca 291
Query: 241 ctgctgtcctgtcatccaagggaaattagtgccccactaaaatgagtgcaagaggcagat 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ctgctgtcctgtcatccaagggaaattagtgccccactaaaatgagtgcaagaggca--- 234
Query: 301 tgcacacagctgagggcttgcacacagctgagggcttgcacacaggggcagactgcacac 360
||||||||||||||||||||||||||||||
Sbjct: 233 ---------------gcttgcacacagctgagggcttgcacacag--------------- 204
Query: 361 agctgagggcttgcacacaggggcagactgcacacagctgcaggcgtacacagttcgcag 420
|||||||||||||||||| ||||
Sbjct: 203 -------------------------------------ctgcaggcgtacacagttggcag 181
Query: 421 cttgtaagaaggtgcaacacttatctcatttcttcccacatgccattagcccactaccca 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 180 cttgtaagaaggtgcaacacttatctcatttcttcccacatgccactagcccactaccca 121
Query: 481 ctgaaccaagcataggctgccccaccgacaggaggagaaagtaagggatggatggta 537
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 120 ctgaaccaagcataggctgccccactgacaggaggagaaagtaagggatggatggta 64
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
