BAC Information

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BAC

Clone NameMSMg01-373P23
Chromosome8 (Build37)
Map Location 46,657,775 - 46,658,240
singlet/doubletsinglet
Overlap geneSorbs2
Upstream geneLOC100039508, Fat1, LOC100039673, Mtnr1a, EG622523, F11, Klkb1, Cyp4v3, BC035537, Tlr3
Downstream genePdlim3, Ccdc110, 1700029J07Rik, 1810047C23Rik, Ankrd37, Lrp2bp, Snx25, 4933411K20Rik, Slc25a4, LOC621269, LOC100039875, LOC667325, Helt, LOC667337, Acsl1, Mlf1ip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373P23.T7 (MSMg01no373_p23.b1)MSMg01-373P23.TJ (MSMg01no373_p23.g1)
ACCAG479896AG479897
length730737
length of high quality
(start - end)
477 (15 - 491)344 (67 - 410)
definitionCHROMAT_FILE: MSMg01no373_p23.b1 PHD_FILE: MSMg01no373_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:05 2005CHROMAT_FILE: MSMg01no373_p23.g1 PHD_FILE: MSMg01no373_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCCTATATTCAGAGGATCCGCGGAATTCTGAATCTCTTCATTTTTAT
TACTGGTTACCTGTTTGACTCAGAAGATTTGGTAATGAAAATGTATAAGA
GTGACTCTGAGAGAAAATGAGATCATTGTTTTGTGGGTGTCATGTGAAAG
TCTAGGACCAAGAAGCCTACGTTAAATACTTTGTTTTATCATAAACTTGA
CTGCAAGTCTAAAAGTCCCCTTGTTAAAACAAAATAAGAGTAGCATGGAA
TGAGTTCAAATGATAACTTCAGTTAAATAAAATGTTTTACATAATTTGAA
AATATTTCAAATGCATTTGTCACAAGATGATAATTATGTGAAGTATTTGC
ACATGTGGTATATCACATATGCATCATACTTTGCTTTTGAGACAGAGTCT
GAAATTCATACTCTTCCCAGCCTTCCATAGCTAGAGTTGAAGGCATTTGC
CAACGTATTACCATGACTTGGCCATCCCATGATGTGTGTCATGGATGTCA
TATATCTATACTGTCACATTACATACCACGAATATATCCAAATTTTATTT
CTGGGATTAAAAATAATCCAACCACCACCACCAACAAGTTCCTTTAGAGA
CAGGCAATTTTGATTCTCCTTGGGGGCACTCTTATCATGGGATAATTGAG
CAAAAATTACTGGTTAATTGACCGAATTGCCGGGGTAAAAAGAAGCCAAA
GAAATTTCCCCTTTTTTGGGGTTGGGGGGG
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTACTTTGCTCTCCAGGTGCCTTCTGTCCTTTC
TACCTGATGTAAGAATCTGAATTGGTATCTGTCTGAATACTGTCTTGTGA
GTCTATCCCTCTGTCTGTTCCTGTGTGTCTGTCCATGTCTAGGTGTGTAT
GTCTGTCTCTAACAAAGGGCTTTGTTCCATGACAATTGAAAAGTGTAGAA
AACATCATGTAGGGAAGGGATGGGATATTTTATAGAAATATTTAGCTGAG
TTTTATGAGGGATTATTTTTTTGACTCCAAAGCCCCGCAGTATTATTAGC
AATATTGTTTCTCCAGCAACAATTGTCTGTTGTCTGCTGATGGTAGATGG
TCATCATACAACACCGCTTTCATTCTCTATTTGCTCTATTTTCGAAAACT
TATTATTACACCACCCATCCATTATTCTGGATAAGTTTATGCTATAATAT
GCAACTAATTTTCATTTTTGTCCTAATTTAGTCCGTTATATCTTCTTCCC
TTACTACGTTATTTTAAAACTTCTTTAATTTTGTTTACTCCTCCTTTCTT
TTTTTTCATCCTTATTCATTTTCTCATCATTCTTTTTTTTCTCTTTCTTT
TTTATATTTTTTACGTATTGTCATCGTATTCCCCTTCAATAACTCTCCTC
TTCTTCCCTTCCTCTCCATCATTTACTTTATTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_p23.b1 MSMg01no373_p23.b1 CHROMAT_FILE:
MSMg01no373_p23.b1 PHD_FILE: MSMg01no373_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:05 2005
         (477 letters)



>mm_chr8_46657564_46658440
          Length = 877

 Score =  878 bits (454), Expect = 0.0
 Identities = 463/466 (99%)
 Strand = Plus / Minus

                                                                       
Query: 12  gaattctgaatctcttcatttttattactggttacctgtttgactcagaagatttggtaa 71
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gaattctgaatctcgtcatttttattactggttacctgtttgactcagaagatttggtaa 618

                                                                       
Query: 72  tgaaaatgtataagagtgactctgagagaaaatgagatcattgttttgtgggtgtcatgt 131
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 617 tgaaaatgtataagagtgactctgagagaaaatgagatcattgtttcgtgggtgtcatgt 558

                                                                       
Query: 132 gaaagtctaggaccaagaagcctacgttaaatactttgttttatcataaacttgactgca 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gaaagtctaggaccaagaagcctacgttaaatactttgttttatcataaacttgactgca 498

                                                                       
Query: 192 agtctaaaagtccccttgttaaaacaaaataagagtagcatggaatgagttcaaatgata 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 agtctaaaagtccccttgttaaaacaaaataagagtagcatggaatgagttcaaatgata 438

                                                                       
Query: 252 acttcagttaaataaaatgttttacataatttgaaaatatttcaaatgcatttgtcacaa 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 acttcagttaaataaaatgttttacataatttgaaaatatttcaaatgcatttgtcacaa 378

                                                                       
Query: 312 gatgataattatgtgaagtatttgcacatgtggtatatcacatatgcatcatactttgct 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gatgataattatgtgaagtatttgcacatgtggtatatcacatatgcatcatactttgct 318

                                                                       
Query: 372 tttgagacagagtctgaaattcatactcttcccagccttccatagctagagttgaaggca 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tttgagacagagtctgaaattcatactcttcccagccttccatagctagagttgaaggca 258

                                                         
Query: 432 tttgccaacgtattaccatgacttggccatcccatgatgtgtgtca 477
           |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 257 tttgccaacgtattaccatgacttggccatcccatgttgtgtgtca 212


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)