BAC Information

Click to search

BAC

Clone NameMSMg01-374A10
Chromosome8 (Build37)
Map Location 65,610,358 - 65,610,488
singlet/doubletsinglet
Overlap geneSpock3
Upstream geneLOC100040775, LOC384830, LOC100040804, LOC665267
Downstream geneLOC384831, EG244495, Tll1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374A10.T7 (MSMg01no374_a10.b1)MSMg01-374A10.TJ (MSMg01no374_a10.g1)
ACCAG479918AG479919
length864789
length of high quality
(start - end)
142 (44 - 185)346 (58 - 403)
definitionCHROMAT_FILE: MSMg01no374_a10.b1 PHD_FILE: MSMg01no374_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:07 2005CHROMAT_FILE: MSMg01no374_a10.g1 PHD_FILE: MSMg01no374_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTTACGTATTTATCTGTGGATGTAGTGAAGAGTATTTAGAATGCAG
TTGAAAATGATGGGGTTTTCATTCATGTTCCGTGGCCATGTATATATATA
TATATGTGTGTGTGTGTGTGTGTGTGTGTGTAAATATATATATATTTCCT
CTCTCCTCCTTCCTNCCCCCCTTTCCTCCCCCCCCACCTCCCCCCCTTCC
CTCCCCCTCTCCCCCTCTCCCCCCTTCCCTCTCCCCCCATCTCCCTCTCT
CCCCTTCCTCCCCTCTCTCTTCTCTTTTTATCCCTCTCCCCCCTCCTTCC
TCCCTCTACTCCCTCTCCTCCCCTCTCTCTCCCCCCCCTCTCTACCCCTC
CCCCTTTCCTCTCCCCCCCCCCCCCCCCTCTCCTCCTTCCCCTCCTCCTC
CCCCTTTTTCCCCTCCCCCCCCTCCCCCATTCCCCCATCCTTCTTTTACC
CCCCCCCCTTCTTATTCTCCACTTCCCCCTCTTCCTTACCCCCCCCCCCT
TCCTCTCTTCCCTCTCTCCTCCCTTCTAATTTCCTCACCCCTCTTCACCC
CTTCCTTCTCTCCTTCCCTCCCCTCTCCTCCCCCTTTTTCCCTCCCCTCT
CCCCCCCTCCCCTCCCTCCTCCCCCTCCTTCCCCCCCTCTCTCCCCTCCC
CCCTCTATTCCTCTCCACCGCCCCCCCTATATTCCTATTTTCCTCCCCCC
TTCCCCTTCTTTCCCCTTACACTCTCCCCCCTCACCCCCTCCCACCCCTC
CTCTCTCCTTCACCCTCTCCTCCTCCCCTCATCCCTCCACCACACTCCCC
TTTCCCCTCTCCCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGAT
ATTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATATATGT
TGGATAACTGGCTGTTATCATGTAGAAGAATTCGAATTGATCCATTCCTA
TCTCCTTGTCCGAAGGTCAAATCTAAGTGGATCAAGGAACTCCACATAAA
ACTGGAGACAGTAAAACTTATAGAAGAGAAGGTGGGGAAAAGCCTCGAAG
ATATGGGCACTGGGGAAACATTCCTGAATAGAACAGCAATGGCTTGTGCT
GTAAGATCAAGATTGGACAAATGGGACCTCATAAAATTGCAAAACTTCTG
TAAGGCAAAACACACTGTCAATAATACAAAAATGCTGCCTACACATTGGT
AAAGGATCTTTACCTATCCTAAATCTGATAGGGGACTAATTTCCAATATT
TACAACGAACTCTCAAAGGCGGACTTCCTAAAAATCCAATAACCCCATCA
ATAATGGCGGCTCTCAGCTTCTCCATTTAATTTCTACCTGTAGGAATCCT
CTTTCCCTTATAACCACCTTATCTAAACGTTCTCTAATCCTTATTCCTCC
TGTTAATTCTCCTTCTCATATAACATCTGTATCCCCCCTCCCACCCCTCT
TCTATCTTCTTTTTTATCATTAACCCTTTATCTATCTTTATCATGTTTTG
CTTCTCTTCTTTATAATAATAATACCCAACTTTCTCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_a10.b1 MSMg01no374_a10.b1 CHROMAT_FILE:
MSMg01no374_a10.b1 PHD_FILE: MSMg01no374_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:07 2005
         (142 letters)



>mm_chr8_65610154_65610695
          Length = 542

 Score =  226 bits (117), Expect = 4e-64
 Identities = 129/135 (95%), Gaps = 4/135 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttttacgtatttatctgtggatgtagtgaagagtatttagaatgcagttgaaaa 64
           |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 205 gaattcgtttacgtatttatctgtggatgtagtgaagaatatttagaatgcagttgaaaa 264

                                                                       
Query: 65  tgatggggttttcattcatgttccgtggccatgtatatatatatatatgtgtgtgtgtgt 124
           ||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||
Sbjct: 265 tgatggggttttcattcatgttccgtggccatgtatatatatat----gtgtgtgtgtgt 320

                          
Query: 125 gtgtgtgtgtgtgta 139
           |||||||||||||||
Sbjct: 321 gtgtgtgtgtgtgta 335


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 142
Length of database: 542
Length adjustment: 8
Effective length of query: 134
Effective length of database: 534
Effective search space:    71556
Effective search space used:    71556
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)