BAC Information

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BAC

Clone NameMSMg01-375L10
Chromosome8 (Build37)
Map Location 3,224,030 - 3,224,467
singlet/doubletsinglet
Overlap geneInsr
Upstream geneEG664801, EG209786, D630014A15Rik
Downstream geneA430078G23Rik, Arhgef18, Pex11c, 1700019B03Rik, Zfp358, Mcoln1, Pnpla6, C330021F23Rik, 2310057J16Rik, Xab2, Pcp2, Stxbp2, Retn, 1810033B17Rik, LOC664858, Trappc5, Fcer2a, Clec4g, Cd209a, LOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik, BC068157
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375L10.T7 (MSMg01no375_l10.b1)MSMg01-375L10.TJ (MSMg01no375_l10.g1)
ACCAG481201AG481202
length801785
length of high quality
(start - end)
251 (67 - 317)438 (80 - 517)
definitionCHROMAT_FILE: MSMg01no375_l10.b1 PHD_FILE: MSMg01no375_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:23 2005CHROMAT_FILE: MSMg01no375_l10.g1 PHD_FILE: MSMg01no375_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGATCCGCG
GAATTCTCAAATTGCCCTTTCTTTCATTGCTGGCAGGGAGATTTACATGA
ACATTGGTTTTATTTGTTTGTTTTTTCTGCTATTGCTTTTGTTCTGAGAC
AAGGTTTCATCTATGACTGTAGCCTTGGCCTGCCTGAAACTCAAATTGCC
CTGAAATTCACAGAGATCTGCCTGTCCCTGCTTCCCAAATGCTGGAGTTA
AAGGCATGTGCTACTATACCCTGTGTGAAAGCTGTTATAAGACACATTTG
TGTTAAAGGGTGGGGTGTATAGACAGAGAGAGAGAGAGAGAGACAGAGAC
AGAGACAGATACAGAGACAGAGAGAGACAGAGACAGAGAATATAAAGAGG
GTCTTGGGAGGTAAAAAATGTCCCTTTAACTCAGGTAAGAATCTTTGTTC
CTAACTCTCGTTAAATAATGCTGTTTCTGGAATCCAAGTATACAAATGTG
ATGCTTGCTGTTTTCACTAACATTACGTTTACTACACGTTCTAATTTTCC
CTGATAAATCCATATTTCCTATGAAAAAGCAATTGCCACTTTAATCCTTC
ACAACCCCCGACCTTTCCCCCTTCACTATTCTTTTCCTCTTTTTTTAACC
TTGTACTACTTTTCCCCCTCTTTTAACCCTATCCATCTCTTCTCTTTCCC
CCTCTTTAACTCCCTATATTTAATACCCCTTTATTTCCTTTTCCCTATCT
TATTTCTTTCCGCGATCGCCCTTTTCTTTCTTTCACCCTACAATTGTCCT
T
TTTCCAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCATCTCTGTCTACCCAGA
ACAGTGGTAACAGACATGTATTGCTGCACCTGGCTTTTAATGTGGATGTG
GGAGACCCATGATCACTCCTCAGACTTGTGCATCAACCAGTTCAGTGCCT
AAGCCTAACCAACATTCACCTTTGGACTCTATACCCATACATGTACACCT
CCTATAGTACATACGTGATGAAACAGTAAGGAGAAAAAATAATGGCTACA
GATCTCTGAGGAATCTATTTTCTGGTCATGTCTATTTCACATACAATACA
CATGTGTGCACATATATATGCACAAACATAGATAACACATATAACACATG
TGCACACATACAAAACACATATACACACATGGCGCACATTGCACACGTAA
TACATATGCGTATAAACACATGCACAAATACATAGCATACACACTTAGGC
TTCCTACCGTTGGGAATGAACCAATCAAGAAATAAACTGAAACTTATGCC
ATCTTTGTCACTATGAGGTCTGGTGGGCAATTTCACCTTGTTAGTGGCAG
TTCAGGACACCGTTTTATCATCTAGGAAAGAGGCCCTTGAATCTTGGTTT
TCTGGCCCTAAACCCCCATTGGTTTTTTGTCCCCCAAAAAATTTTCTTTT
AAAAAACCCCCTGGGGACCTTGCCCATAAAGCTCAAAACTTTCCTAGGGC
CAATTAAACCACTAATATCCTATATCTCTCTACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_l10.g1 MSMg01no375_l10.g1 CHROMAT_FILE:
MSMg01no375_l10.g1 PHD_FILE: MSMg01no375_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:24 2005
         (438 letters)



>mm_chr8_3223883_3224720
          Length = 838

 Score =  832 bits (430), Expect = 0.0
 Identities = 436/438 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcccatctctgtctacccagaacagtggtaacagacatgtattgctgcacctggctttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tcccatctctgtctacccagaacagtggtaacagacatgtattgctgcacctggctttta 526

                                                                       
Query: 61  atgtggatgtgggagacccatgatcactcctcagacttgtgcatcaaccagttcagtgcc 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 525 atgtggatgtgggagacccatgatcactcctcagacttgtgcattaaccagttcagtgcc 466

                                                                       
Query: 121 taagcctaaccaacattcacctttggactctatacccatacatgtacacctcctatagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 taagcctaaccaacattcacctttggactctatacccatacatgtacacctcctatagta 406

                                                                       
Query: 181 catacgtgatgaaacagtaaggagaaaaaataatggctacagatctctgaggaatctatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 catacgtgatgaaacagtaaggagaaaaaataatggctacagatctctgaggaatctatt 346

                                                                       
Query: 241 ttctggtcatgtctatttcacatacaatacacatgtgtgcacatatatatgcacaaacat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 345 ttctggtcatgtctatttcacatacaatacacatgtgtgcacatatatatgcacaaatat 286

                                                                       
Query: 301 agataacacatataacacatgtgcacacatacaaaacacatatacacacatggcgcacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 agataacacatataacacatgtgcacacatacaaaacacatatacacacatggcgcacat 226

                                                                       
Query: 361 tgcacacgtaatacatatgcgtataaacacatgcacaaatacatagcatacacacttagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 tgcacacgtaatacatatgcgtataaacacatgcacaaatacatagcatacacacttagg 166

                             
Query: 421 cttcctaccgttgggaat 438
           ||||||||||||||||||
Sbjct: 165 cttcctaccgttgggaat 148


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)