BAC Information

Click to search

BAC

Clone NameMSMg01-375P20
Chromosome8 (Build37)
Map Location 35,523,454 - 35,698,799
singlet/doubletdoublet
Overlap geneLOC666746
Upstream geneLOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2, Rbpms, LOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159
Downstream geneDusp4, LOC675578, Tnks, LOC666792, LOC666797, LOC666804, Ppp1r3b, Thex1, Mfhas1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375P20.T7 (MSMg01no375_p20.b1)MSMg01-375P20.TJ (MSMg01no375_p20.g1)
ACCAG481413AG481414
length784780
length of high quality
(start - end)		331 (49 - 379)483 (76 - 558)
definitionCHROMAT_FILE: MSMg01no375_p20.b1 PHD_FILE: MSMg01no375_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:46 2005CHROMAT_FILE: MSMg01no375_p20.g1 PHD_FILE: MSMg01no375_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,698,473 - 35,698,799)(35,523,454 - 35,523,936)
sequence
GGATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTAGAGTTTTCGAGTATTTGAAAATGTCTTTGTTCTCATATTT
GGTGGATGGTTTGTCTGGTAATATGATTTTAGGTCTTACTACTGTTTCCC
TCAGAACTCTGGAGCTGGCGTTGGTTCGAGTCTTCGGGTTCAGTGTGAGC
CGCAGCCCTCTGAGGTGTTTAGGTTTTCTTCCTTTTGCATGTGATACTTC
TGTTCTTTGAAATTATTTTTATCTTCTCCATTTAAAAAAATGCTTAGTAG
GCTTTAGTGTGGTTCGTTGCTCATCCCTTTAAAACATTATTACCTTTATT
TATTTGCTTGCTTGTGTGCGCATGTGGAGGTCAGAGGACAGGTTGTGAGA
ACCGGTTCTCTCTTTCTATCATCTGTACCCCACGAGTCGAACTCAGGTGG
ACTGGTTTAGCTACTCTTTATCCCCAGAGTCATCTTGTCAGCCAGCTTAT
TCTTTGCGCCGAGGATTTGCGGCCTATTTTCGACTTAATAGTCTCTTGCT
TGCCTACTTGTCGTTACTTGTCCCTTCATCTTTCCGATTTCTTCCCTCCT
TCCTTTGCCCCCACCGGCTTTCACTTTTTCTTTCTTTTTATGCCCTTTTC
CCCTTGTTTCTTTTTCTCCATTTTTCCCTTTCCATCTCCCTTATTCCCCC
CTTTTCCCCCTATTTTTCTCCCTTCTTCCCTTTACATTCATTCACTACCC
TCCTCCCCTTTCCTTCCTTTTATTTATTTATCTN

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGGCTACTGAGGTAACAGCTATT
GATCCTGAGGAAGGCTTTAAAAGGGGTGGGTCAAGCCTACAGCGGCTCAT
CCTGGCAGCTGCACAGGGATGCGGCCTTCGAAAGTCAGAGTTTGAGATTT
GAATCTGAATCATTCATATATATTTGTAAGACGTGATGACCTTCATTCAA
ACCTGGAGGCAAAGAGCATTTAGCAAGGACACTGATGAGCCTGTGATTGC
CGCCATTCCCCAAGCCTGAGAGAGCCTGCTCCAGCCCATCCCCCACGCCA
CTGGTATGTAGAACAAGTCATAAAAGATAATGCTAAGGCACTTTGCACGC
ATAAAATGCTACATGGCTGATACTACTGCTTCCCATCATTTAGTGTCTGA
CAATAAATGCATACCGTTTATAATCATTTTATGGGACTTTGATGGCTGCT
GACTCTTACCAAATATGGAATAGAAACTAGGGTATATGTGGTAGGCAAAG
ATTGTGGTAGACAAAACTTCTTTATTATAAGAAATACCCTTTTCCCCTTC
ATATTGGAAAAAAATTGGTTTGCTTGTCCCGAATTTTCTTCTAAAAGGTG
ATACTAAATCCCCCATTTATTTATGGATATTTTAAAAATTTTCCCAAGAC
CCCCTTGTCTTAAGGGGTTGGGGATTAACATAACCTGGGATAATTTGGTG
GGGGGGTATTTTTTTTTTTTTATTATCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_p20.b1 MSMg01no375_p20.b1 CHROMAT_FILE:
MSMg01no375_p20.b1 PHD_FILE: MSMg01no375_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:46 2005
         (331 letters)



>mm_chr8_35698157_35698887
          Length = 731

 Score =  609 bits (315), Expect = e-179
 Identities = 324/327 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctagagttttcgagtatttgaaaatgtctttgttctcatatttggtggatggttt 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 gaattctagagtttttgagtatttgaaaatgtctttgttctcatatttggtggatggttt 584

                                                                       
Query: 65  gtctggtaatatgattttaggtcttactactgtttccctcagaactctggagctggcgtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 gtctggtaatatgattttaggtcttactactgtttccctcagaactctggagctggcgtt 524

                                                                       
Query: 125 ggttcgagtcttcgggttcagtgtgagccgcagccctctgaggtgtttaggttttcttcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ggttcgagtcttcgggttcagtgtgagccgcagccctctgaggtgtttaggttttcttcc 464

                                                                       
Query: 185 ttttgcatgtgatacttctgttctttgaaattatttttatcttctccatttaaaaaaatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ttttgcatgtgatacttctgttctttgaaattatttttatcttctccatttaaaaaaatg 404

                                                                       
Query: 245 cttagtaggctttagtgtggttcgttgctcatccctttaaaacattattacctttattta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 cttagtaggctttagtgtggttcgttgctcatccctttaaaacattattacctttattta 344

                                      
Query: 305 tttgcttgcttgtgtgcgcatgtggag 331
           |||| ||| ||||||||||||||||||
Sbjct: 343 tttgtttgtttgtgtgcgcatgtggag 317


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no375_p20.g1 MSMg01no375_p20.g1 CHROMAT_FILE:
MSMg01no375_p20.g1 PHD_FILE: MSMg01no375_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:46 2005
         (483 letters)



>mm_chr8_35523254_35524136
          Length = 883

 Score =  934 bits (483), Expect = 0.0
 Identities = 483/483 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagggctactgaggtaacagctattgatcctgaggaaggctttaaaaggggtgggtcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagggctactgaggtaacagctattgatcctgaggaaggctttaaaaggggtgggtcaag 260

                                                                       
Query: 61  cctacagcggctcatcctggcagctgcacagggatgcggccttcgaaagtcagagtttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctacagcggctcatcctggcagctgcacagggatgcggccttcgaaagtcagagtttga 320

                                                                       
Query: 121 gatttgaatctgaatcattcatatatatttgtaagacgtgatgaccttcattcaaacctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatttgaatctgaatcattcatatatatttgtaagacgtgatgaccttcattcaaacctg 380

                                                                       
Query: 181 gaggcaaagagcatttagcaaggacactgatgagcctgtgattgccgccattccccaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggcaaagagcatttagcaaggacactgatgagcctgtgattgccgccattccccaagc 440

                                                                       
Query: 241 ctgagagagcctgctccagcccatcccccacgccactggtatgtagaacaagtcataaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgagagagcctgctccagcccatcccccacgccactggtatgtagaacaagtcataaaa 500

                                                                       
Query: 301 gataatgctaaggcactttgcacgcataaaatgctacatggctgatactactgcttccca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gataatgctaaggcactttgcacgcataaaatgctacatggctgatactactgcttccca 560

                                                                       
Query: 361 tcatttagtgtctgacaataaatgcataccgtttataatcattttatgggactttgatgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcatttagtgtctgacaataaatgcataccgtttataatcattttatgggactttgatgg 620

                                                                       
Query: 421 ctgctgactcttaccaaatatggaatagaaactagggtatatgtggtaggcaaagattgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgctgactcttaccaaatatggaatagaaactagggtatatgtggtaggcaaagattgt 680

              
Query: 481 ggt 483
           |||
Sbjct: 681 ggt 683


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |