Query= MSMg01no376_e14.b1 MSMg01no376_e14.b1 CHROMAT_FILE:
MSMg01no376_e14.b1 PHD_FILE: MSMg01no376_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:09 2005
(490 letters)
>mm_chr8_62338772_62339661
Length = 890
Score = 221 bits (114), Expect = 1e-61
Identities = 141/150 (94%), Gaps = 4/150 (2%)
Strand = Plus / Plus
Query: 5 gaattcacattta-tttctaagtatgtgtttaattggaagatatacaaacctcaattaaa 63
||||||||||||| ||| |||||||||| ||||| ||||||| |||||||||||||||||
Sbjct: 205 gaattcacatttagttt-taagtatgtggttaatgggaagatgtacaaacctcaattaaa 263
Query: 64 ttcataatataaagtaaaatatatgatttag-attttactagaagatgagaggtttactg 122
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 264 ttcataatataaagtaaaatatatgattt-gcattttactagaagatgagaggtttactg 322
Query: 123 atatattttgcctataaaattatatataca 152
| |||||||||||||||||| |||||||||
Sbjct: 323 acatattttgcctataaaatcatatataca 352
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no376_e14.g1 MSMg01no376_e14.g1 CHROMAT_FILE:
MSMg01no376_e14.g1 PHD_FILE: MSMg01no376_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:09 2005
(451 letters)
>mm_chr8_62487039_62487887
Length = 849
Score = 795 bits (411), Expect = 0.0
Identities = 441/451 (97%), Gaps = 2/451 (0%)
Strand = Plus / Minus
Query: 1 aatgtgaggatctcaattcctctggtaagagacccggaattggaatgtgttaacaagggc 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 649 aatgtgaggatctcaattcctctggtaagagacctggaattggaatgtgttaacaagggc 590
Query: 61 acagtgcatgttatgttaaacatcactcagaactcttctcttgtgcctccttgtcaggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 acagtgcatgttatgttaaacatcactcagaactcttctcttgtgcctccttgtcaggaa 530
Query: 121 tgtttaccatggtcaccaagagcccatgaaaaatctccatttgtttacattttttgtagt 180
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 529 tgtttaccatggtcaccaagagcccatgaaaaatctccatttgtttaaattttt-gtagt 471
Query: 181 tgcttatttaacatgcatttttgtctaaatatgcatattttatgcatttattttttcata 240
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 470 tgcttatttaacatgcatttatgtctaaatatgcatattttatacatttattttttcata 411
Query: 241 ttttatgatgattagggaaaccatgtaaggacaagaactataccaatatccttttttctt 300
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 410 ttttatgatgattagggaaaccatgtaagttcaagaactataccaatatccttttttctt 351
Query: 301 ctccttcctttgcatgtgaatcatatatggtagagttgcaaaatcatatatggtatagaa 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ctccttc-tttgcatgtgaatcatatatggtagagttgcaaaatcatatatggtatagaa 292
Query: 361 attatgtacttgggcttttcttgttatcttctactattcctggcatgagataaaatagtt 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 291 attatgtacttgggcttttcttgttatcttctactattcctggcgtgagataaaatagtt 232
Query: 421 aaaaaaatattcagttttgttacttccatgg 451
||||||||||| |||||||||||||||||||
Sbjct: 231 aaaaaaatattaagttttgttacttccatgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 849
Length adjustment: 10
Effective length of query: 441
Effective length of database: 839
Effective search space: 369999
Effective search space used: 369999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
