BAC Information

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BAC

Clone NameMSMg01-377J21
Chromosome8 (Build37)
Map Location 67,587,146 - 67,742,331
singlet/doubletdoublet
Overlap geneLOC665388, LOC665396, LOC100040949
Upstream geneTll1, LOC100040989, Cpe, Sc4mol, Klhl2, LOC100040903, LOC619647, 3110005G23Rik, Trim75, Trim60
Downstream geneLOC665405, Vaultrc-ps1, LOC100040967, March1, LOC100040986
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377J21.T7 (MSMg01no377_j21.b1)MSMg01-377J21.TJ (MSMg01no377_j21.g1)
ACCAG482656AG482657
length786798
length of high quality
(start - end)		472 (47 - 518)399 (74 - 472)
definitionCHROMAT_FILE: MSMg01no377_j21.b1 PHD_FILE: MSMg01no377_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:52 2005CHROMAT_FILE: MSMg01no377_j21.g1 PHD_FILE: MSMg01no377_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,741,864 - 67,742,331)(67,587,146 - 67,587,544)
sequence
NTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTAAGCCTCCTGTCTCTACTGCCCAAATGCTGGAATACCAGAGG
TGTGTGCTGAGCCCAGAAGGTGCCATTCTAATATGTTTAAATGAGAAGAG
AAGATGTGTCCATTTTCTGTGTTGTACTTTGGCTTAGACTCAGCTGTTGA
GAAACCATGGTCACAGATGCCAAAAGAGAGGGCTTCATCTACTCCAACAG
GCAGATGTCTGCCTCATGTCTTCTTCCAAACACACTCATAAGTGAGTTCT
TCCATGTTTTAGTCATCTGAAGCAAAAACAATGCAAACCAAGTCTGACTC
CTCAAGCCAGCAGACCAGCAGAGGTAACTCGATGATCCATATATGAACCC
TGAGATTGCCAAAGATCTTCTAAGAGTTGTTCCTCACAAGAATCCTTCCA
ACTTACACTTCAGATGATGTTGCCCTGATGCTGAGGTAGAAGTCTGAAGA
TACCAGACAGCCCTGAGCTCAGTGCAGAATGGCACAGTCCCTTTGTCAGC
AGGGTTTCCTCTTCTCTGGGAGATTCTGGACCCCCCCCACCCCCAGCCTT
GATTTATGTCTCCCTTAGTTCTTGCCCCCTGGGATTCCTTGAATTGTTTC
CCCCCTTGCTTATGAGTGCTTTACTTTACCCTCATTCCTTTTGCCCCATG
ACCTTTGTCTTCTCTCTGGGTAATACTCCCTCCCCTCTCCCCTTTAACAT
ATATTATTTCCCGGTGCTTTTCCCGTTTTCCATTTG

GATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGTCCAGGGCTTTGTGCAAGCTAGCA
AACATTCTACCAGCTGAGCTGAGTCCTCAATTCACTGTCATGTATTGGAA
AGAGTATAGATATTTGGTTAGTTGTCTGTAGATAGTGATAGTCTGGTCCT
TCATGTGGATAGTCATGATGCCAGCAGCCATTTCAATCAAGGGAAAGAGA
AGTGACATCCAAAATGAGAAAACCCTTTTCTGTGGCAGGATCTTGTGCAT
CCTGGGATGTCTGGAAGCAAGCTATGTGGCCGAGGATGTCCTCAAATCTC
TGATCCTGTTGTTCCCACCTCCTAAAGGCTGAGATTGTGGACATCTGCCA
ACATCTCCAGTTTATGTGATGTGCGAGCTAAACTCGGTCTCCTTTATGCT
GTGAAGCACTTTACCAACTGAGTGGCATTCTCAGCCTTATCCCAAGTGAG
CTTAGATTTAACCTCACCCAGACCAGCCTCCTGTACAGTTGGAACAGAAA
CCACACTTTGTCAGAAGTAAACGTTCTCATTTACCCTCCTTCCCTCTCCA
GAAATCCTATAGAAACTTTCTTATTCTTGAGCGAATAATGTTATTTTTTC
CCCCCCCCCTTATACTTTTGGTTTTCGCGTTTTTTTATTTTTTCCCAATG
CTTCCTTCCCTCCTCCTTCACATATTCCGCATTTCTCTTTTTCTTCCCCT
CTTTTTCCCCACCCTCCTACTTTTTTTATTATTTTTATCATTCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_j21.b1 MSMg01no377_j21.b1 CHROMAT_FILE:
MSMg01no377_j21.b1 PHD_FILE: MSMg01no377_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:52 2005
         (472 letters)



>mm_chr8_67741660_67742531
          Length = 872

 Score =  859 bits (444), Expect = 0.0
 Identities = 462/468 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttaagcctcctgtctctactgcccaaatgctggaataccagaggtgtgtgctga 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gaattcttaagtctcctgtctctactgcccaaatgctggaataccagaggtgtgtgctga 613

                                                                       
Query: 65  gcccagaaggtgccattctaatatgtttaaatgagaagagaagatgtgtccattttctgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 612 gcccagaaggtgccattctaatatgtttaaatgagaagagaagatgtgtccattttctga 553

                                                                       
Query: 125 gttgtactttggcttagactcagctgttgagaaaccatggtcacagatgccaaaagagag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gttgtactttggcttagactcagctgttgagaaaccatggtcacagatgccaaaagagag 493

                                                                       
Query: 185 ggcttcatctactccaacaggcagatgtctgcctcatgtcttcttccaaacacactcata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ggcttcatctactccaacaggcagatgtctgcctcatgtcttcttccaaacacactcata 433

                                                                       
Query: 245 agtgagttcttccatgttttagtcatctgaagcaaaaacaatgcaaaccaagtctgactc 304
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 432 agtgagttcttccatgttttagtcatctgaaacaaaaacaatgcaaaccaagtctgactc 373

                                                                       
Query: 305 ctcaagccagcagaccagcagaggtaactcgatgatccatatatgaaccctgagattgcc 364
           |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 372 ctcaagtcagcagaccagcagaggtaactcgatgatccatgtatgaaccctgagattgcc 313

                                                                       
Query: 365 aaagatcttctaagagttgttcctcacaagaatccttccaacttacacttcagatgatgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aaagatcttctaagagttgttcctcacaagaatccttccaacttacacttcagatgatgt 253

                                                           
Query: 425 tgccctgatgctgaggtagaagtctgaagataccagacagccctgagc 472
           |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tgccttgatgctgaggtagaagtctgaagataccagacagccctgagc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no377_j21.g1 MSMg01no377_j21.g1 CHROMAT_FILE:
MSMg01no377_j21.g1 PHD_FILE: MSMg01no377_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:52 2005
         (399 letters)



>mm_chr8_67586946_67587744
          Length = 799

 Score =  748 bits (387), Expect = 0.0
 Identities = 396/399 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtccagggctttgtgcaagctagcaaacattctaccagctgagctgagtcctcaattc 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 cagtccagggctttgtgcaagctagcaaacattctaccagcagagctgagtcctcaattc 260

                                                                       
Query: 61  actgtcatgtattggaaagagtatagatatttggttagttgtctgtagatagtgatagtc 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 actgtcatgtattggaaagagtatagatatttggttggttgtctgtagatagtgatagtc 320

                                                                       
Query: 121 tggtccttcatgtggatagtcatgatgccagcagccatttcaatcaagggaaagagaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtccttcatgtggatagtcatgatgccagcagccatttcaatcaagggaaagagaagt 380

                                                                       
Query: 181 gacatccaaaatgagaaaacccttttctgtggcaggatcttgtgcatcctgggatgtctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacatccaaaatgagaaaacccttttctgtggcaggatcttgtgcatcctgggatgtctg 440

                                                                       
Query: 241 gaagcaagctatgtggccgaggatgtcctcaaatctctgatcctgttgttcccacctcct 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaagcaagctatgtggctgaggatgtcctcaaatctctgatcctgttgttcccacctcct 500

                                                                       
Query: 301 aaaggctgagattgtggacatctgccaacatctccagtttatgtgatgtgcgagctaaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaggctgagattgtggacatctgccaacatctccagtttatgtgatgtgcgagctaaac 560

                                                  
Query: 361 tcggtctcctttatgctgtgaagcactttaccaactgag 399
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcggtctcctttatgctgtgaagcactttaccaactgag 599


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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