BAC Information

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BAC

Clone NameMSMg01-377K24
Chromosome8 (Build37)
Map Location 125,829,712 - 125,971,158
singlet/doubletdoublet
Overlap geneFanca, Spire2, Tcf25, Mc1r, Tubb3, Def8
Upstream geneZfpm1, Trhr2, 5830416A07Rik, Il17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik, Cdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h, C230057M02Rik, A530010L16Rik, BC021611, LOC100043225, Cdh15, Ankrd11, Spg7, Rpl13, Cpne7, Sult5a1, LOC100043251, Dpep1, Chmp1a, 4732415M23Rik, Cdk10, Spata2L, 1300018I17Rik, Zfp276
Downstream geneAfg3l1, Dbndd1, Gas8, Rn5s-ps1, Rhou, LOC100042484, LOC100042490, Rab4a, 1700054N08Rik, LOC100043296, Acta1, Nup133, Abcb10, Taf5l, AK122209, LOC100042530, LOC100042535, Galnt2, Pgbd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377K24.T7 (MSMg01no377_k24.b1)MSMg01-377K24.TJ (MSMg01no377_k24.g1)
ACCAG482710AG482711
length782820
length of high quality
(start - end)		407 (48 - 454)355 (76 - 430)
definitionCHROMAT_FILE: MSMg01no377_k24.b1 PHD_FILE: MSMg01no377_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:57 2005CHROMAT_FILE: MSMg01no377_k24.g1 PHD_FILE: MSMg01no377_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,829,712 - 125,830,114)(125,970,804 - 125,971,158)
sequence
NTTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTGTTACCTCGCCACAGCACGTATGTCCGGAGTAGATAGGAA
TCCTGCAAATGACATGAGGGGGTGGCCAAGAGGGAAAGCACTGTTCATAG
CCGGGATCCTGTCCAAGAACCAACGGGGCTCACCATCATGCAAGCCAGGA
AATCACTTTCTCAACCAGGCCATGAAGCCACACGTGTCAAATGAATCATG
GGACATGTGGTTTCATCAAGAGAGAAGTGAGCCATCTTAGGATGTCAAGA
GTCCAGAAGCAGGGCAGGAGATTAGACACACTAGGAAGGCAGGAGCTGCA
TACCACAGCGGAAGACAGACACGTGGGAGGGAGGTCACACACACAGGACA
GAAAAGTGGGCCTGAAGGACCTTCAGGGTCCCACATCCTAGAAATCTGGA
GGCTGAACAGGATTCTACAATAAGAAAGAGAACTCATGTCCTACCTCAGA
AAAGGTTGGAGAGACCCCCTGGGCTTTTACAAAAAACTTTCCCGAAGGCC
CCCCATCCGTTAAGAGGTACCCCGCCGGGTTACTGGTACCCCCCCAAAAA
TTTAAAAAGGCCTGTGTTTTTTACCCATATAAAACCGTTTTTTTCCCCCA
AAAATAGTTTCTCTTTAATTACCCTTTCCCTTTCCTTCTTGGTTATCCCC
AATTTCTTTTGGGGACTAATTTTCCCCCCTCCTTTTCCGGCACTTTTACT
TTCAACCCCCTTTTCCAATTACACATCTTCCG

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGGAGTTAAATCCAAGGTCCATC
CTTGGCCTGCTATTGGCAGGGTGACCTAGGCCCCTCCCCGGGCCCCAACA
ATGCAACTGGGTTCTAGTAGGAGATGGTACCTCTTAAGCTTCAGTTCCTG
TCCTACGTCACGACCACATGGCCTGAGCTGTCCCTGCCATGGGATTGCGT
GTAGCAGAAGTGTTCAGGTCCGCACTTGTCAGAAGTTAAGATCACCAGAC
ACTCTGTCCCCTCCCTAGGGCTCAGCCCACAATGGGAACACAAAATCTGG
TGGCTCCTGGCAGAAGGGAGGGGCTGTCTGTGTCTGAATGAACCAGGAGC
AGTTGGAATGCAGTTCTCCACTTATCTAGTCAAGCCACATTCCATAGCTT
CTCTCCGCCTCTGCTCCCTCATCCAGAGGTGGGTCCCTTTGGGTGAAATT
AATTCTAGAACTCGAGCACCAATAACATCTGTGAATGTCTTCTGTGGGGG
CGCTCGCTTTTTTTCCCCCCCCTGGGAAATTTTATAAAATCCTATATTCC
CCGACTCATCCAAAACCTTGTTCATTTAACCAATCCTTCGGCTGTTTATT
AAATTATTTTTTCCCCCCCCTCCTTTTCTTTTTTCTACCTCTCAATTCAC
TTTTACCCCCCCCCATTTTTATCTCCGTCGCTTCTCCCCGTTTTTTTTGT
CTCTCTTTTTTTCCTACCTTTTCTTTTAATTTCTCCTTTTATCTCTCGTT
ATTCTATCCCCAAATTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_k24.b1 MSMg01no377_k24.b1 CHROMAT_FILE:
MSMg01no377_k24.b1 PHD_FILE: MSMg01no377_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:57 2005
         (407 letters)



>mm_chr8_125829508_125830314
          Length = 807

 Score =  756 bits (391), Expect = 0.0
 Identities = 400/403 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctgttacctcgccacagcacgtatgtccggagtagataggaatcctgcaaatg 64
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgttaccacaccacagcacgtatgtccggagtagataggaatcctgcaaatg 264

                                                                       
Query: 65  acatgagggggtggccaagagggaaagcactgttcatagccgggatcctgtccaagaacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acatgagggggtggccaagagggaaagcactgttcatagccgggatcctgtccaagaacc 324

                                                                       
Query: 125 aacggggctcaccatcatgcaagccaggaaatcactttctcaaccaggccatgaagccac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aacggggctcaccatcatgcaagccaggaaatcactttctcaaccaggccatgaagccac 384

                                                                       
Query: 185 acgtgtcaaatgaatcatgggacatgtggtttcatcaagagagaagtgagccatcttagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acgtgtcaaatgaatcatgggacatgtggtttcatcaagagagaagtgagccatcttagg 444

                                                                       
Query: 245 atgtcaagagtccagaagcagggcaggagattagacacactaggaaggcaggagctgcat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atgtcaagagtccagaagcagggcaggagattagacacactaggaaggcaggagctgcat 504

                                                                       
Query: 305 accacagcggaagacagacacgtgggagggaggtcacacacacaggacagaaaagtgggc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 accacagcggaagacagacacgtgggagggaggtcacacacacaggacagaaaagtgggc 564

                                                      
Query: 365 ctgaaggaccttcagggtcccacatcctagaaatctggaggct 407
           ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 565 ctgaaggaccttcagggtcccgcatcctagaaatctggaggct 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no377_k24.g1 MSMg01no377_k24.g1 CHROMAT_FILE:
MSMg01no377_k24.g1 PHD_FILE: MSMg01no377_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:57 2005
         (355 letters)



>mm_chr8_125970604_125971358
          Length = 755

 Score =  671 bits (347), Expect = 0.0
 Identities = 353/355 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctggagttaaatccaaggtccatccttggcctgctattggcagggtgacctaggcccct 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tctggagttaaatccaaggcccatccttggcctgctattggcagggtgacctaggcccct 496

                                                                       
Query: 61  ccccgggccccaacaatgcaactgggttctagtaggagatggtacctcttaagcttcagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 495 ccccgggccccaacaatgcaactgggttctagtaggagatggtacctctcaagcttcagt 436

                                                                       
Query: 121 tcctgtcctacgtcacgaccacatggcctgagctgtccctgccatgggattgcgtgtagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tcctgtcctacgtcacgaccacatggcctgagctgtccctgccatgggattgcgtgtagc 376

                                                                       
Query: 181 agaagtgttcaggtccgcacttgtcagaagttaagatcaccagacactctgtcccctccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agaagtgttcaggtccgcacttgtcagaagttaagatcaccagacactctgtcccctccc 316

                                                                       
Query: 241 tagggctcagcccacaatgggaacacaaaatctggtggctcctggcagaagggaggggct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tagggctcagcccacaatgggaacacaaaatctggtggctcctggcagaagggaggggct 256

                                                                  
Query: 301 gtctgtgtctgaatgaaccaggagcagttggaatgcagttctccacttatctagt 355
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gtctgtgtctgaatgaaccaggagcagttggaatgcagttctccacttatctagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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