BAC Information

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BAC

Clone NameMSMg01-377M09
Chromosome8 (Build37)
Map Location 51,874,801 - 51,875,179
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039919, EG667495, LOC100039954, LOC100039966
Downstream geneLOC667517
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377M09.T7 (MSMg01no377_m09.b1)MSMg01-377M09.TJ (MSMg01no377_m09.g1)
ACCAG482776AG482777
length846784
length of high quality
(start - end)
177 (75 - 251)383 (78 - 460)
definitionCHROMAT_FILE: MSMg01no377_m09.b1 PHD_FILE: MSMg01no377_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:04 2005CHROMAT_FILE: MSMg01no377_m09.g1 PHD_FILE: MSMg01no377_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATGAATGACATGAATGTTTAAAAAGTGAAAATGGCAATCCAG
AGAGAAAGAGAAAGAGTGGGGGAGAGAGAGAGTGCCAGAGCCAGACAAAA
ACAGAGAGACAGACAGACAGGCAGACACACACACACACACACACACACAC
ACACACACACACACACACACACACACACACACACACACACACGGGGGTGG
TGGGGGTGGCTTACCTCTCCCCCCTTCCTTTCTTTTTTTTCCTTCCCTCT
CCTTCACCCTCAAATTTTTTCTCATTTTCCTCGCTTTTCTTTCTCCCTTT
CCTCTCACCTCTTCTCTTCCCCTTCCTATCCACCTTCCTTCCTTTTTCTT
CTTTCTTTCCTTTTTCTTATTCCTCCCTCCCTATATTACTACCTTCCCCT
CCATAACCACTCTATTCCCCTCCTCCTTCTTTTTCCTCCCCCTTCCTCTT
CTTCCCTTTTTCCTTTTTATTTTCCTCTCCTATATCCCTATCTTTATTTC
CTAATTTCCTGCATCCCTTCCCATTCTCCCCTTCTTCTTTTCCCCCTCCT
CTTTTTCTTCATTCCCCCTTCTTTCCCCTTTTCCCACTTTTTTCCCCCTT
TCCTCTCCCCCCTTTTACCTTTTTTCCTCCTCTTCACTCCCAACCTACCT
CTGTTTTTTCCCTTTTTCCCCCCTCATACATTCATTACCATTTTTCCCCC
CCTCCCCTTTCCCCCTTTTTCCCTTCCCCCCTTTTTCTATTCACTCTCTA
CACACCTCCCTTTTTATTTTTTTCCCCTCACCCCCTCTTCCCTTCC
NNTCGATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTATGTATTTTGCCCCAGTTTCTG
ATTTTTTAAAAAAAGGCTAATAAGCCTGGCTTCCTCAAGAATAAACAAGG
ATAATTTTACTTTCTTGGGAAAGAATCTGTTAATTCCAGTAATAATCTAT
AATTTTATGTTGAAAGTTTTTATTTGTACTCTGAAAGTACTTTTGAAGAT
AAAGTGTAAGATCACTGGTAAGTGGCTAATGCTTTCTACAGTGGTCATAC
ATCACAAAGACATGATTTTCATTTTCAAAATGCTTCTATTCTACTTGAGT
TTTAAAGTACATTTGCATGGTATAAATGTAGATATTAACACTCTATGACG
CAAGGTTAACAGAAAGGAAATAGAAGTACCTCATTCTACAGCCTAAGAAA
CAGCCAACTCAGGAGAGCAGCAAGATTTGAGCATCGTAATATAATGCTGT
AAATGTCAAAAGGATGTAAATTCAGACACAAGGCAGGCAAAGAGAGAATA
ACTTACCATGTGACTGCTATGATGTAAAACCACCTGAGCAATCTTGGATG
GATTTTTGAAGGTGAAAAAAAAATTTGAGTTTATTTCCCGAAAATTCTTG
GACAACCTTTTAATTCCTATTCTTTTCATACACGCTTACTGAAAAAAAAA
ACACTTCTCAATTTCTTCACCCTTTTTTATTTTTGCCCCGATGAACTTTA
AGTAATTTTACCCTCTCGGCCTCTCTTTATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_m09.g1 MSMg01no377_m09.g1 CHROMAT_FILE:
MSMg01no377_m09.g1 PHD_FILE: MSMg01no377_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:05 2005
         (383 letters)



>mm_chr8_51874601_51875379
          Length = 779

 Score =  582 bits (301), Expect = e-170
 Identities = 362/389 (93%), Gaps = 16/389 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgtattttgccccagtttctgatttttt--aaaaaaaggctaataagcctggcttcct 58
           ||||||||||||||||||||||||     |  ||||||||||||||||||||||||||||
Sbjct: 579 tatgtattttgccccagtttctga-----taaaaaaaaaggctaataagcctggcttcct 525

                                                                       
Query: 59  caagaataaacaaggataattttactttcttggg-aaagaatctgttaattccagtaata 117
           |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 524 caagaataaacaaggataattttactttcttgggaaaaaaatctgttaattccagtaata 465

                                                                       
Query: 118 atctataattttatgttgaaagtttttatttgtactctgaaagtacttttgaagataaag 177
           |||||||| |||||||||||| ||||||||||||||||||||| ||| ||||||||||||
Sbjct: 464 atctataactttatgttgaaattttttatttgtactctgaaagcactgttgaagataaag 405

                                                                       
Query: 178 tgtaagatcactggtaagtggctaatgctttctacagtggtcatacatcacaaagacatg 237
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 404 tgtaagatcactggtaagtggctaacactttctacagtggtcatacatcacaaagacatg 345

                                                                       
Query: 238 attttc---attttcaaaatgcttctattctacttgagttttaaagtacatttgcatggt 294
           ||||||   |    ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 attttcaaaa----caaaatgcttctattctacttgagttttaaagtacatttgcatggt 289

                                                                       
Query: 295 ataaatgtagatattaacactctatgacgcaaggttaacagaaaggaaatagaagtacct 354
           |||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||| ||
Sbjct: 288 ataaatgtagatattaacgctctttgatgcaaggttaacagaaaggaaatagaagtatct 229

                                        
Query: 355 cattctacagcctaagaaacagccaactc 383
           ||||||||||||||||||| |||||||||
Sbjct: 228 cattctacagcctaagaaa-agccaactc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 779
Length adjustment: 9
Effective length of query: 374
Effective length of database: 770
Effective search space:   287980
Effective search space used:   287980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)