BAC Information

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BAC

Clone NameMSMg01-377P07
Chromosome8 (Build37)
Map Location 108,069,047 - 108,069,323
singlet/doubletsinglet
Overlap geneAtp6v0d1
Upstream geneCar7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2
Downstream geneAgrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377P07.T7 (MSMg01no377_p07.b1)MSMg01-377P07.TJ (MSMg01no377_p07.g1)
ACCAG482916AG482917
length785911
length of high quality
(start - end)		282 (55 - 336)---
definitionCHROMAT_FILE: MSMg01no377_p07.b1 PHD_FILE: MSMg01no377_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:19 2005CHROMAT_FILE: MSMg01no377_p07.g1 PHD_FILE: MSMg01no377_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCCCTATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCTCTCTCTCAGCTTCCTGCTATTTCTGAAGGTTGT
GGAGGAGGGGATGTGACTGGGAATAGAATCCAAGCATTAGGAGAGGCTTG
GAACTTATAGATGCCTAGTGGGAGACTTAGCCACCCAGTCCTAGTCCAGC
CCCTCAAGGGCACCCGAGGACTACAGGGGCTAGGTTTGCTATGGGACCTG
GGCTCAGCAGCCTAACAGCATCAGTGACAGTCCTTGAGAGGACCAGGCAT
GACTGGTTTGAGGTATGAGCTGTGTTCTAGTTACAGTAGACTCTGGGGAC
AACATTGGTCTACCCTCAAGCCCAGTTGTCTACCCCAAATTCCATCAGCG
GCCCCGTGTTATGTGTCTTGACCCCTGGTATGCTTGAATGTATATTACTT
TCTTTTTATCCTGATTCTTCTTCTCATTAACACGTTTGTTTTGTTACTTT
AATTCTCTTGCTTTACTGTGCTTTTTTATTTCCTATCTCACTATTATTTC
CTATTTATTTTACCCCTTCCTTTTCCACTCCTCTCCTTTGTCCTTCTTTT
CCCTTCTTTCCCCTTTCTTCCCCTCTTCTTCATTCCCACATATCTTTACC
CACTTTTTTTCTCCTTTTTTTCTTTGCCCTCATTTTATTTTTCCCATCTC
CTTCCCTTTTTTTTTTTTCATTCATTGCTTCTTTTTTTTCTTTACCTATT
CCTTCTATCCCGTTCCTTTTCCCCTTTCTCCTTTC

TTTTCCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAAAAAAAAAAAAAAA
AACGAATCTTTGTCTTAAGCTCGGGGTGGGTGTAGTCAAGCCCACCCCCC
CCCTCTTTCTCCTCTTCCCCCTTCCCCCCTCCTTCTTCCCCTTCCTCCCT
TTTTCTTTCTTCCTCCCCCTTTCTCTTCCTCCCCTTTCTTCCCCCCCCCC
CCTTTCTTCTTCCTTTTCCCCTTTTCCCCTTTCTTTTTTTCTCCTCCCCC
TTCTCTCCTCCCCTTCCCCTTTTCCCCTCCTCTTTTTTNTTCCCCCCTTC
TCTTTCCCCTTTTCTCCCCTTTTTTTCCCCCCCCCCTCTCCTTCTTTTCC
CTTTTCCCCCTTCTTTCCCCCCTCCCCCCTCTTCTCCTCCCTTTTTTCTT
TCTTCCCCCCCTTTTTTTCTCCCCCCCCCCCCCCCTTCTTCCCTTCTTTT
TCTTCTTCCCCCCCCCTTTCCCCTTTTCCCCCCCTCTTTTCTTTTCTTTT
CTTTCCCTCCTTTTTTTTTCCCCCTCCCTTTTTTCCCCCTCTCCCTTTTT
CCCTCTTCTCCTTTTTCCCCCCCCCCTTTTTTTTTTCCCCCCCCTCTTTT
TCCCCTCTTTTCTTCTCCCCCCTCCCTCTTTCTCCCTCTCCTCCCCTCTC
TCTCCCTTCTCCTCTTTTTCTCTTCCTTCTCCCCCCTCTCTTTCTCCCCC
CCCCCCCCCCCCTTTTCCTCCCTCTCCTTTCCCTTTTTTCCTCTTCTTTC
CTCCCCCCCCCCCTTCCCCCCCCCCCCCTCCTTTTCCCTCTTTCCCCTTT
TTCCTCCCCTCATTTCTCCCCCCCCACAACCCCTTTTTTTCTTTCCTTTC
CCCCCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_p07.b1 MSMg01no377_p07.b1 CHROMAT_FILE:
MSMg01no377_p07.b1 PHD_FILE: MSMg01no377_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:19 2005
         (282 letters)



>mm_chr8_108068843_108069523
          Length = 681

 Score =  491 bits (254), Expect = e-143
 Identities = 272/278 (97%), Gaps = 1/278 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctctctctcagcttcctgctatttctgaaggttgtggaggaggggatgtgact 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctctc-ctcagcttcctgctatttctgaaggttgtggaggaggggatgtgact 263

                                                                       
Query: 65  gggaatagaatccaagcattaggagaggcttggaacttatagatgcctagtgggagactt 124
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 264 gggaatagaatccaagcattaggagaggcctggaacttatagatgcctagtgggagactt 323

                                                                       
Query: 125 agccacccagtcctagtccagcccctcaagggcacccgaggactacaggggctaggtttg 184
           |||||||| | ||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 324 agccacccggccctagcccagcccctcaagggcacccgaggacaacaggggctaggtttg 383

                                                                       
Query: 185 ctatgggacctgggctcagcagcctaacagcatcagtgacagtccttgagaggaccaggc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctatgggacctgggctcagcagcctaacagcatcagtgacagtccttgagaggaccaggc 443

                                                 
Query: 245 atgactggtttgaggtatgagctgtgttctagttacag 282
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atgactggtttgaggtatgagctgtgttctagttacag 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 681
Length adjustment: 9
Effective length of query: 273
Effective length of database: 672
Effective search space:   183456
Effective search space used:   183456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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