BAC Information

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BAC

Clone NameMSMg01-379F24
Chromosome8 (Build37)
Map Location 74,267,657 - 74,268,004
singlet/doubletsinglet
Overlap genenone
Upstream genePde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1
Downstream geneEG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374, Tpm4, Rab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2, Eps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a, Nwd1, Sin3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379F24.T7 (MSMg01no379_f24.b1)MSMg01-379F24.TJ (MSMg01no379_f24.g1)
ACCAG484003AG484004
length771768
length of high quality
(start - end)		463 (37 - 499)348 (75 - 422)
definitionCHROMAT_FILE: MSMg01no379_f24.b1 PHD_FILE: MSMg01no379_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:08 2005CHROMAT_FILE: MSMg01no379_f24.g1 PHD_FILE: MSMg01no379_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:08 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TAGTCCTACATTTCACAATACGACTCACTATTTCCAGAGGATCCGCGGAA
TTCATAAAATTACCGAAAGTAAATAATACCGGCTCCTGGAAGTAGGTACA
GTCAACATGGAAGCAACCAACATATTTATGTTTCTCTTTTTAGATTGACT
GGCTTTAAGTGTGTGAATGCTTTGCATGTGTATTTTGTCTGTGTCCCATG
TGTGTGTGTGCTTCCCACAGACATCAGAAGAGGTTATTTCACCCCCGGAC
TTGGTGTTCCAGAATTTTGTCCGCAAATGTTTATGTATTATAAATGAAAC
CCAGGTGCTAGGCAAGAGCAATACTTGTTAAAAACTCATCAGCCCCCTTT
TCTAGCTCCTAGAGTGAATGTGTTTGATATGAAAATGATTAAAAGTATCA
TAAGGGAAAATAAGTAGTCAGTCTTAGGATATTTTTAACTTCCTGGATCC
AGGCCTCAGCCTTCACATTTTACCTATTGAAGTCCAAAGGACTAATAGGC
AGGGTGTGCACAATATGAGGCTTGGTATGCTGTGCACACCTTTAATTCAT
GAACCCCCAAATCATGCAGGATTGTCTTTTGTCCAGTCCAAGAAACCCTG
TTCCTTTAATGATAAGAAGTCCTCTGGCCTCTCTTAGACTCTCCTTTTCC
CTTTTATCTTTAACACTACAAAAATCCTTGGTTTCAAATATATTTGTTAT
TATTATTCCCCCCTATTTCTTAATACACCTAATTAATTGTTTTTTAAATA
CCTTTCTCCTCCTCTTCTGTT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCAGTCAAGAAGGTGCTGTAGGATGG
TGTTGAGCAGTTCATGCTCCACAGACCCTAGGAGATGTCCTAGAAGTCAA
CGAGGCTGAGCTGTGCGGATGGCAGGTCTTCAGGAGAGAGAAATGATAAC
CAAAGCCACTAAGAAATTCCTGAATCATAGCATCTGTTAACAAGATATTT
TGTTTACTAAGAGGCTCTGAGTCACACAGAGGCATCTGAGGAGTGAGGGG
AGCCCTGTAGCCATTGTTCTGACACCCACTAGGGTGTGAGAAAGGTGGTA
TTCTTCCTGTGGAGCCTGTCCTGGGAGCAGCCCTCACCTAGGGCCCAGCT
CCCACTGTCAGCAGGAGGCAGGCAGCTCTGGTCTTTGCACATCTCTCTCC
TCTCTTGCAGGAAGCCTGCAGCTGCTGGTGCTTGTGTTGTTTCCTCAAAC
AAGGGAAAGAAAATGGCCGTTGAGCCCTTTTCTGGCTCCTTTTAAAATGG
TTCGTTTGCGTTTGCCCTCCCAAAATTTCGGTTTAATTTTTTTACCCCCC
GGGGCCTTACTCCCTTTTACCGACGGCTTTTCCTTTTTCCTCCTCTTCCT
TTACCCCTCCCTTTCCTTATCCTTTCTTTCAATCCCTCTTCCCTCCTTTT
TTTTTTCTCTTTATCTCTACCTTCTCTTTCTTTTATCTCCCCTTCCCCTT
TTTTCTTTTCTATCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_f24.g1 MSMg01no379_f24.g1 CHROMAT_FILE:
MSMg01no379_f24.g1 PHD_FILE: MSMg01no379_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:08 2005
         (348 letters)



>mm_chr8_74267457_74268204
          Length = 748

 Score =  673 bits (348), Expect = 0.0
 Identities = 348/348 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagtcaagaaggtgctgtaggatggtgttgagcagttcatgctccacagaccctaggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagtcaagaaggtgctgtaggatggtgttgagcagttcatgctccacagaccctaggag 260

                                                                       
Query: 61  atgtcctagaagtcaacgaggctgagctgtgcggatggcaggtcttcaggagagagaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtcctagaagtcaacgaggctgagctgtgcggatggcaggtcttcaggagagagaaat 320

                                                                       
Query: 121 gataaccaaagccactaagaaattcctgaatcatagcatctgttaacaagatattttgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gataaccaaagccactaagaaattcctgaatcatagcatctgttaacaagatattttgtt 380

                                                                       
Query: 181 tactaagaggctctgagtcacacagaggcatctgaggagtgaggggagccctgtagccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tactaagaggctctgagtcacacagaggcatctgaggagtgaggggagccctgtagccat 440

                                                                       
Query: 241 tgttctgacacccactagggtgtgagaaaggtggtattcttcctgtggagcctgtcctgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttctgacacccactagggtgtgagaaaggtggtattcttcctgtggagcctgtcctgg 500

                                                           
Query: 301 gagcagccctcacctagggcccagctcccactgtcagcaggaggcagg 348
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagcagccctcacctagggcccagctcccactgtcagcaggaggcagg 548


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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