Query= MSMg01no379_g10.b1 MSMg01no379_g10.b1 CHROMAT_FILE:
MSMg01no379_g10.b1 PHD_FILE: MSMg01no379_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:10 2005
(379 letters)
>mm_chr8_100669543_100670321
Length = 779
Score = 509 bits (263), Expect = e-148
Identities = 287/305 (94%), Gaps = 16/305 (5%)
Strand = Plus / Minus
Query: 71 tatctatctatctatctatctatctatccatctatctatctatctatcttttaatatatt 130
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 761 tatctatctatctatctatctatctatctatctatctatctatctatcttttaatatatt 702
Query: 131 tatttttataactgtttggttaattggttatttgttcttttttgatttttgttttatgtt 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 tatttttataactgtttggttaattggttatttgttcttttttgatttttgttttatgtt 642
Query: 191 gttttctttctttctatttatttatttatttatttatttatttatttatttatttactta 250
|||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 641 gttttctttc----------------tatttatttatttatttatttatttatttactta 598
Query: 251 tttacttattcattcactttacatccagatcactgccacaacttccagtcatcccccccc 310
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tttacttattcattcactttatatccagatcactgccacaacttccagtcatcccccccc 538
Query: 311 catatactctttccctccatatttctccccttctcctcagagaaggtagggggtgggggg 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 catatactctttccctccatatttctccccttctcctcagagaaggtagggggtgggggg 478
Query: 371 tgggg 375
|||||
Sbjct: 477 tgggg 473
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space: 284900
Effective search space used: 284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no379_g10.g1 MSMg01no379_g10.g1 CHROMAT_FILE:
MSMg01no379_g10.g1 PHD_FILE: MSMg01no379_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:10 2005
(541 letters)
>mm_chr8_100526487_100527427
Length = 941
Score = 1015 bits (525), Expect = 0.0
Identities = 537/541 (99%)
Strand = Plus / Plus
Query: 1 aaggaaaaacatttgatagagaagcattttcaataacaagtttttacataaaaaataaaa 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 aaggaaaaacatttgatagagaagcatttccaataacaagtttttacataaaaaataaaa 260
Query: 61 ggttcatatttactagaaaaatatagacattttaaaaaaataatacattgtattttaaat 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 ggttcatatttactagaaaaatatagacatttaaaaaaaataatacattgtattttaaat 320
Query: 121 gatgttcatcaaattctcatgtgaatttccaactatgatttaaaaatataacactgagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgttcatcaaattctcatgtgaatttccaactatgatttaaaaatataacactgagaa 380
Query: 181 tgtattcctatgatattattactttttggcaacaaaagagaaacattcaaataaataata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtattcctatgatattattactttttggcaacaaaagagaaacattcaaataaataata 440
Query: 241 tcagtattttagacttaatgtaagatcaccaacttacaaaagggaaaataatattaacat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagtattttagacttaatgtaagatcaccaacttacaaaagggaaaataatattaacat 500
Query: 301 ctcaaaacaaaaatataatgaaaaattgtgttagctgtctttaaaatatgatactaagtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcaaaacaaaaatataatgaaaaattgtgttagctgtctttaaaatatgatactaagtt 560
Query: 361 gaagtaatgaaaaatattttttcatttaaaacagacatatagatcaacagaacagatcaa 420
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 561 gaagtaatgaaaaatattttttcacttaaaacagacatatagatcaacagaacagatcga 620
Query: 421 aagttaagaaacaaattcttgcaccaatagcctattgactttcaaaatgtgcttcaagca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagttaagaaacaaattcttgcaccaatagcctattgactttcaaaatgtgcttcaagca 680
Query: 481 cattgtagggaagatgcgtaagcttttcattaaatgatgcttgaacatcaattatcctgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cattgtagggaagatgcgtaagcttttcattaaatgatgcttgaacatcaattatcctgt 740
Query: 541 c 541
|
Sbjct: 741 c 741
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
