BAC Information

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BAC

Clone NameMSMg01-381D15
Chromosome8 (Build37)
Map Location 74,033,623 - 74,077,874
singlet/doubletdoublet
Overlap genePlvap, LOC665928, Bst2, 1110012M11Rik
Upstream geneUba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3
Downstream geneBC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374, Tpm4, Rab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2, Eps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381D15.T7 (MSMg01no381_d15.b1)MSMg01-381D15.TJ (MSMg01no381_d15.g1)
ACCAG485417AG485418
length740782
length of high quality
(start - end)		472 (31 - 502)456 (70 - 525)
definitionCHROMAT_FILE: MSMg01no381_d15.b1 PHD_FILE: MSMg01no381_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:33 2005CHROMAT_FILE: MSMg01no381_d15.g1 PHD_FILE: MSMg01no381_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,033,623 - 74,034,094)(74,077,429 - 74,077,874)
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCAGGGAGGAGCACAGTCCTGTCCTA
TTGTCTGAGGGAGGAGGCTGGGTCTGTGGTAGTGATCTGAGAGAGGAGGC
CACCTCTATCCTCAGGCAGCCTAGGACCCTGTCCTCTCCAGGGGAGATCC
TTGCTTCACCCCTAATTTAGTGCCTGCCAGCACCCCTGCTGTTGGGTCAG
AAGCTGCCTCAGCCTGCAGCCTCTTGTTCTCCTTGTGGCAGTGTGGAGGT
GTCTTGGGTGAACACAGTCGGATGTGTGTAACATCGTACTGGGACTGTGT
GGGGACAGCTATCTCCAGGACCTCAGTTCTGTAACTGTCCCAGGTCACAG
TGGGCTCCTTCCTATCTCCTACCACACAGTATTCAAAGACAAGTGCCCCC
CCACCCCACCCCCTCTCTGACAAATGTCTATGTACCCCAGGGTAGACTTG
AAGCAGCTCTTGCTGCTTTAGCTCGAAAGCATTAGAGTGATGTACATGCT
CAACCCTGCTCGCTAATGGGCCTGGAGCACAGAGCTTCCCCCATGTTTGG
GCAAGGCTGAGCTCTTATTTGGCCCCCACTCTGTTCACCTTGTTATACAG
AGGGAAACCCCACCCTCTTAACCTGTTTACCTTCTTGGAAATTGCCTAAA
TAGTATCAAGCAGCTCCCACATTTTTTTACCCGTTTGGTATCCCCTTATC
CACTTTTTTTTCCCTCTAATAACAAGCTTTACTTTTTTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACCCAAGGCTGTGTCAAGAGACTCTGAAGAG
CTGTCAGAAGGCAAAGACAAAACCCACCCTCCCTTTGGGCACAACACTAG
GAGCAGAACTGGGGAGCCAAGTAGGCTTTATCTCAGCCTCCATCTTGGGA
CTGTCCAGGCTCACGCCAGGTCAGAGCCAAGCCATCAGGCAAAACAGTTG
ATCAGGGTGTGGCAGAATGTGGCTCCCTCCTCCAATAGCCACGACCAAGA
CACCCCCATCTCTCCTTGTTTGTTTTGATGAGGTTTTATATAGCTCAGAC
TGCACAGGAACCAGCTATGAAGCTGAAGAGAACTTCAATTCTGATCCTCC
TGCCTCCACCTCTGGGTGCTAGTATGCCCACCATGCCTGGCTAAGTCACC
TCACAGAACCACCAGGGAGAGTCTGCAGCTAGCTGGCCAAGGAAGGAGGA
TCTCTGAAAGTTCTAGCTCAGGCTAGGCTACATAGTGAGACCCTGCCTTG
ACAAAGTAGCCTGTGTTGGCCAGGCATGGAAAAATAAATTTGTGATTGCC
GGAGCAGGAAGATTGTGGTTTGTTCCAACGGGGGAGAATAAACAATCCCC
CCCCCTTGGAGGCTGGAGCCGGACCCGGAAGAAATTCGGGGCCCCTTTTG
GGACAAAAGGAGGTTGGAAAAAACCGGGCCTCTGTAACTTAAAAAAAAAA
AAAAAAAATGGTGTTCGCGCCTCTCAAATGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_d15.b1 MSMg01no381_d15.b1 CHROMAT_FILE:
MSMg01no381_d15.b1 PHD_FILE: MSMg01no381_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:33 2005
         (472 letters)



>mm_chr8_74033423_74034294
          Length = 872

 Score =  905 bits (468), Expect = 0.0
 Identities = 471/472 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggagcacagtcctgtcctattgtctgagggaggaggctgggtctgtggtagtgatctga 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggagcacagtcctgtcctagtgtctgagggaggaggctgggtctgtggtagtgatctga 260

                                                                       
Query: 61  gagaggaggccacctctatcctcaggcagcctaggaccctgtcctctccaggggagatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagaggaggccacctctatcctcaggcagcctaggaccctgtcctctccaggggagatcc 320

                                                                       
Query: 121 ttgcttcacccctaatttagtgcctgccagcacccctgctgttgggtcagaagctgcctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgcttcacccctaatttagtgcctgccagcacccctgctgttgggtcagaagctgcctc 380

                                                                       
Query: 181 agcctgcagcctcttgttctccttgtggcagtgtggaggtgtcttgggtgaacacagtcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcctgcagcctcttgttctccttgtggcagtgtggaggtgtcttgggtgaacacagtcg 440

                                                                       
Query: 241 gatgtgtgtaacatcgtactgggactgtgtggggacagctatctccaggacctcagttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatgtgtgtaacatcgtactgggactgtgtggggacagctatctccaggacctcagttct 500

                                                                       
Query: 301 gtaactgtcccaggtcacagtgggctccttcctatctcctaccacacagtattcaaagac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtaactgtcccaggtcacagtgggctccttcctatctcctaccacacagtattcaaagac 560

                                                                       
Query: 361 aagtgcccccccaccccaccccctctctgacaaatgtctatgtaccccagggtagacttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagtgcccccccaccccaccccctctctgacaaatgtctatgtaccccagggtagacttg 620

                                                               
Query: 421 aagcagctcttgctgctttagctcgaaagcattagagtgatgtacatgctca 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagcagctcttgctgctttagctcgaaagcattagagtgatgtacatgctca 672


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no381_d15.g1 MSMg01no381_d15.g1 CHROMAT_FILE:
MSMg01no381_d15.g1 PHD_FILE: MSMg01no381_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:34 2005
         (456 letters)



>mm_chr8_74077429_74078284
          Length = 856

 Score =  862 bits (446), Expect = 0.0
 Identities = 446/446 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acccaaggctgtgtcaagagactctgaagagctgtcagaaggcaaagacaaaacccaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 acccaaggctgtgtcaagagactctgaagagctgtcagaaggcaaagacaaaacccaccc 387

                                                                       
Query: 61  tccctttgggcacaacactaggagcagaactggggagccaagtaggctttatctcagcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tccctttgggcacaacactaggagcagaactggggagccaagtaggctttatctcagcct 327

                                                                       
Query: 121 ccatcttgggactgtccaggctcacgccaggtcagagccaagccatcaggcaaaacagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ccatcttgggactgtccaggctcacgccaggtcagagccaagccatcaggcaaaacagtt 267

                                                                       
Query: 181 gatcagggtgtggcagaatgtggctccctcctccaatagccacgaccaagacacccccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gatcagggtgtggcagaatgtggctccctcctccaatagccacgaccaagacacccccat 207

                                                                       
Query: 241 ctctccttgtttgttttgatgaggttttatatagctcagactgcacaggaaccagctatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ctctccttgtttgttttgatgaggttttatatagctcagactgcacaggaaccagctatg 147

                                                                       
Query: 301 aagctgaagagaacttcaattctgatcctcctgcctccacctctgggtgctagtatgccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 aagctgaagagaacttcaattctgatcctcctgcctccacctctgggtgctagtatgccc 87

                                                                       
Query: 361 accatgcctggctaagtcacctcacagaaccaccagggagagtctgcagctagctggcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86  accatgcctggctaagtcacctcacagaaccaccagggagagtctgcagctagctggcca 27

                                     
Query: 421 aggaaggaggatctctgaaagttcta 446
           ||||||||||||||||||||||||||
Sbjct: 26  aggaaggaggatctctgaaagttcta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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