Query= MSMg01no381_e01.b1 MSMg01no381_e01.b1 CHROMAT_FILE:
MSMg01no381_e01.b1 PHD_FILE: MSMg01no381_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:36 2005
(539 letters)
>mm_chr8_108291062_108292000
Length = 939
Score = 1035 bits (535), Expect = 0.0
Identities = 538/539 (99%)
Strand = Plus / Plus
Query: 1 ctggcatgtgccaccactgtccagcatgctttaaatatttaatgacaaagttttcccttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggcatgtgccaccactgtccagcatgctttaaatatttaatgacaaagttttcccttc 260
Query: 61 ccttctctccctccagttttctccatgcacccattctgtcagtgtcattcctgaggtcag 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 ccttctctccctccagttttctccatgcacccattctgtcagtgtcattcctgaggtcgg 320
Query: 121 catcagtggcctgtttcctgagggtgtgtgtagatagaccacctgctcagtccatgttac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catcagtggcctgtttcctgagggtgtgtgtagatagaccacctgctcagtccatgttac 380
Query: 181 ctttatgtgtaggattcagggcttgtcacttaggtaacaaatgtagggcctcttctctga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttatgtgtaggattcagggcttgtcacttaggtaacaaatgtagggcctcttctctga 440
Query: 241 ggaaaactatttcttctgctctcagcactcctcagttgccagtcaaaggctgaggcttca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaaaactatttcttctgctctcagcactcctcagttgccagtcaaaggctgaggcttca 500
Query: 301 tgagagcgcccacttcaattggtgattcaggtccagtttacgcagccacgctgaagagac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgagagcgcccacttcaattggtgattcaggtccagtttacgcagccacgctgaagagac 560
Query: 361 ttcatggatctaactgctgacatttctagatgaaatctcacagcaaacttcctgttcctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcatggatctaactgctgacatttctagatgaaatctcacagcaaacttcctgttcctc 620
Query: 421 tggcccttacaattttcctgccccttcttccactatgaccctagatagagccttaggtgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggcccttacaattttcctgccccttcttccactatgaccctagatagagccttaggtgg 680
Query: 481 cagatttgtggcatccatcagttgagactgagccctatttcatctttgaaggaaaagaa 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagatttgtggcatccatcagttgagactgagccctatttcatctttgaaggaaaagaa 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no381_e01.g1 MSMg01no381_e01.g1 CHROMAT_FILE:
MSMg01no381_e01.g1 PHD_FILE: MSMg01no381_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:36 2005
(512 letters)
>mm_chr8_108499515_108500426
Length = 912
Score = 932 bits (482), Expect = 0.0
Identities = 501/512 (97%), Gaps = 8/512 (1%)
Strand = Plus / Minus
Query: 1 caaaagggacacaaagaaggagactcctgtttttttgtttgagatagggcatcttgcata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 caaaagggacacaaagaaggagactcctgtttttttgtttgagatagggcatcttgcata 846
Query: 61 tctcggccttacctggatttaattcttctgtctcagcctcccaaggcctgggtgtacagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 845 tctcggccttacctggatttaattcttctgtctcagcctcccaaggcctggatgtacagg 786
Query: 121 catgttgccaccatgtctgaggagagtctcaaccctaagtatcaggctggttaaccctcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 catgttgccaccatgtctgaggagagtctcaaccctaagtatcaggctggttaaccctcc 726
Query: 181 tccatccctgaaacccaggcccaaatcaacccaggagaaaaggttcttccagcacctgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 tccatccctgaaacccaggcccaaatcaacccaggagaaaaggttcttccagcacc---- 670
Query: 241 ggattgcttcccacagcaagagaagcaagcacaatggtagtccagagggtctggactgac 300
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 669 ----tgcttcccacagcaagagaagcaagcacaatggcagtccagagggtctggactgac 614
Query: 301 tgcccctttgtctgtccctgtagaagaagaacggtggcatcgtgatggtgacactatcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tgcccctttgtctgtccctgtagaagaagaacggtggcatcgtgatggtgacactatcca 554
Query: 361 tgggggtgctacagtgcagtctgtttgctaacgtgtccactgtagcaggcatgtcctgtc 420
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 553 tgggggtgctacagtgcagtctgtttgctaacgtgtccactgtagcaggtatgtcctgtc 494
Query: 421 tcaacttttcttaatttaaaaagttgtttcaaaacaaacaaacaaaccaacaaggccggg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tcaacttttcttaatttaaaaagttgtttcaaaacaaacaaacaaaccaacaaggccggg 434
Query: 481 tatggtggcgcacacctttaatcccagcactt 512
||||||||||||||||||||||||||||||||
Sbjct: 433 tatggtggcgcacacctttaatcccagcactt 402
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
