BAC Information

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BAC

Clone NameMSMg01-381G04
Chromosome8 (Build37)
Map Location 71,970,722 - 71,971,213
singlet/doubletsinglet
Overlap geneLOC670593
Upstream gene4732435N03Rik, Ints10, Lpl, LOC100041138, Slc18a1, Atp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561
Downstream geneEG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381G04.T7 (MSMg01no381_g04.b1)MSMg01-381G04.TJ (MSMg01no381_g04.g1)
ACCAG485538AG485539
length715744
length of high quality
(start - end)		534 (36 - 569)568 (73 - 640)
definitionCHROMAT_FILE: MSMg01no381_g04.b1 PHD_FILE: MSMg01no381_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:46 2005CHROMAT_FILE: MSMg01no381_g04.g1 PHD_FILE: MSMg01no381_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:47 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
GCGGTCGTTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTTT
TTACCAATTGACTATGATTGCTGACTGCTCTCCTCCCACCTTTTCTCAAG
AGGAAATATGAGGAATACTTAGCTCTTAATTAAAACACATACAAAAGTAC
ACGGGCACGCAAACACACACACACAAACACAAACACACACACACACACAC
ACACACACACACACACACACACACACACACACACACTAAAAAGAATTAAA
GACAAGATCGGGCATGCTCAGGGTGGTTTGGATGTAGACACTTATGGAAG
TCTAAAAGGAAGGATTCCAGGCCTGAAGGAGATAGGAACTCCAGAGAATG
ACCAACCACCAGAATCAAATAACATGAACCCTCAGGGCACTCAGAGATGG
AACAATGAAACAAAGAACAAACATGGGTTGGACGGATATCTCCGAGCACC
TATGTAGCAGAGGGGCAGCTAGGTCTTCACATGGGTCCCAATCAACTGGA
ATGGGGGTATCAAAAAAAGCTGCTCATCCTACCTCAGTTTTATTCTTCTA
GCTGAGCTACTTTTTCTGTCCTCAGAGAGAGACGAAGTGTTTTTGCCTGG
ACATACAGGGAGTCTCAAACTGCTCATAGGTGAAGTGGACGCAGGTCACG
TAAAGATTGCGCTACTGGTTTACCAAGAAGGGGTTACCTGATTTTATGTA
AACCCGATCCAGAAT

TTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCACATCAAGACGGGCTTTCCAGCTGTGG
CTCGTGGCTGAAAGTCTGCTGTTTGCAGAGCAAGTACCTGGGTAATTTGG
ATACTGTTGTGGCCACCTCAGATGTTGATATAAAACAAGGAGAGACAGAG
AGAGGCACATTCTATTTAAATAATCAAACCAAATCCAAGTGCTCGTACGC
CACAGCTGCTTGGGGAAAAACAGTTCCAGCTTCTTGCCTTCTTCCAACTG
GGGGCCTTCTGGCTTCCCCAAACCTGTGTGTGTCTTCTGGCTTTCACTTA
GAAGAGAAGACACTGGTCTTTGCCTTCTGGCTGCTCAGCCCAATCAAGCA
AGGCACCTTGTCCAAAGGTGAGGTTGTGGCTTCATCATCCAAATGATTCT
TTGTGTTTCAGAGTGCCTTCAAATGTACTGTCATTGTCAGAGAAAAAATT
TAAACTCTTTGGTCTGGGACTCAGGGACAGAATCCATAATTTCATGACTT
CCTCTCAAGACTGTTCTCATGTTGTACAAGTTCCTGCCCAAACAAATCAC
CTACATTTTTTTCTGGAATCTCCTGCTCATTTGTGTCTGTCAATGCANCA
GTGGGTCCACCTCTCTACCCTTTGTTGTTGNTGGTGTTACATTTATTCTC
CCCTACCCCCAATGCTTCAGAAACCTTCTGTATAAACTGTACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_g04.b1 MSMg01no381_g04.b1 CHROMAT_FILE:
MSMg01no381_g04.b1 PHD_FILE: MSMg01no381_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:46 2005
         (534 letters)



>mm_chr8_71970518_71971451
          Length = 934

 Score =  777 bits (402), Expect = 0.0
 Identities = 480/532 (90%), Gaps = 42/532 (7%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactttttaccaattgactatgattgctgactgctctcctcccaccttttctcaa 64
           |||||||||||| | ||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 205 gaattcacttttcagcaattgactatgattgctgactgctcagctcccaccttttctcaa 264

                                                                       
Query: 65  gaggaaatatgaggaatacttagctcttaattaaaacacatacaaaagt--acacgggca 122
           |||||||||||||||||||||||||||||||||||||||| ||||||||  ||||   ||
Sbjct: 265 gaggaaatatgaggaatacttagctcttaattaaaacacaaacaaaagtgcacac--aca 322

                                                                       
Query: 123 cgcaaacacacacacacaaacacaaacacacacacacacacacacacacacacacacaca 182
           |||||||||||||||||||||||||                                   
Sbjct: 323 cgcaaacacacacacacaaacacaa----------------------------------- 347

                                                                       
Query: 183 cacacacacacacacacactaaaaagaattaaagacaagatcgggcatgctcagggtggt 242
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ---acacacacacacacactaaaaagaattaaagacaagatcgggcatgctcagggtggt 404

                                                                       
Query: 243 ttggatgtagacacttatggaagtctaaaaggaaggattccaggcctgaaggagatagga 302
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ttggctgtagacacttatggaagtctaaaaggaaggattccaggcctgaaggagatagga 464

                                                                       
Query: 303 actccagagaatgaccaaccaccagaatcaaataacatgaaccctcagggcactcagaga 362
           ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 actccagaggatgaccaactaccagaatcaaataacatgaaccctcagggcactcagaga 524

                                                                       
Query: 363 tggaacaatgaaacaaagaacaaacatgggttggacggatatctccgagcacctatgtag 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tggaacaatgaaacaaagaacaaacatgggttggacggatatctccgagcacctatgtag 584

                                                                       
Query: 423 cagaggggcagctaggtcttcacatgggtcccaatcaactggaatgggggtatcaaaaaa 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 cagaggggcagctaggtcttcacatgggtcccaatcaactggaatgggggtatcaaaaaa 644

                                                               
Query: 483 agctgctcatcctacctcagttttattcttctagctgagctactttttctgt 534
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 agctgttcatcctacctcagttttattcttctagctgagctactttttctgt 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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