BAC Information

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BAC

Clone NameMSMg01-381O04
Chromosome8 (Build37)
Map Location 77,224,579 - 77,224,938
singlet/doubletsinglet
Overlap genenone
Upstream geneCrry-ps, LOC666146
Downstream geneIsx, Hmgb2l1, Tom1, LOC100039134, Hmox1, Mcm5, Rasd2, LOC675507, LOC384845, LOC666211, LOC100039229, 1700007B14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381O04.T7 (MSMg01no381_o04.b1)MSMg01-381O04.TJ (MSMg01no381_o04.g1)
ACCAG485921AG485922
length1,304753
length of high quality
(start - end)
---360 (70 - 429)
definitionCHROMAT_FILE: MSMg01no381_o04.b1 PHD_FILE: MSMg01no381_o04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:26 2005CHROMAT_FILE: MSMg01no381_o04.g1 PHD_FILE: MSMg01no381_o04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGCATACCTTTCAATTTCGTAACCCATAAATGCCACCACCGACAGTCAA
ATTGACCCCGGCATTTAACCACCCCGATATCATCAATAAAACAATATCCC
CGCGGTACATTAACTTTACATATTATCCATATAATGTAACCTACGCGCTC
GCCTTGCCGCCTCGCTCGGTATAACCGATGATATACGATATCAGTATTAC
GCACACCAACCTGTCGCATTGAGCAGCCAAACTCTGCGATTACGGAGGCA
CAACAGCCGCCCCGCCCGGGAGGACAGTAAGAAGAAAAAGAAAATAGAAA
CGCGCCAGAAAAATCAGTCCACCTGATTATTACCCGATCCCGTCGTTTCC
GGGTCTATTAATTATATGTGGACTTCAATCACGCGGGCGGCTTAATATAT
ACGGCGTAAATAAGAAAACATCCTCAAACAAAATCAGACCTAATANTCCC
GCCGCGGTGTAGCCGAGGAGCGACGTTTATCACAAATATGGGCGCGTTAT
GCACAGCGGACGCCGCGAAACGATATATATCGGACACAACCAATACGCGC
GGGGCTGCATAGCACAGCCCTATTACTGCCGGCATTATGGCACCGTATCA
TCACTCACAGAATTATTGTTGCACCGGCGCACTTTTGTGCGTGCGGCGCC
CCCCCACCACCACCCGCGCCTGTTTTACCACACCACGCCGGCCCGTGGAA
TCGCGATGGAGATTATAATGCGCGCCTGACGGCGCTAGATAACGCCGCAC
GGTCTTGAAACGGTTAATAGTATATACACAACCACCGCCCGTTCGATACA
CATATACCACGGCCGTTATTAACTTTCGTAGAGGCACCACTACTACGCGA
CGAGGCCGGCGGCGCGCGGCAATTTTGTATATATATTAACGGACACCTTA
GTGTTGCATCGCCGCGACTCACTCGACAAAATTATCTGATACGCCGCGTA
ATGTGCGGTGATATTATGTGTATACATAACATGTATATCGCGACGCGGTA
AATACAGTGACGGTGCGCGCGAATATTCCGGAACCATATAAGCCGGCACT
AGTGGGCGGTGCGCTATTATTTACACCCGCCCCATACACGAGACGACTTT
CGTACGTAAAGCGCCGCGCAGTGTATACGTCAGATAATCGTGGATATTTT
ACGACACGCGCGCACGACCGATATATGCGGCGTTTATCGCGCTTTCACGC
CCACTCACCTTTCGTTATATTTCGTGGCGAAACACGTATCGCACTCATAA
CAACATCTAATTGTGTCGTGATAGAGGAATCGCGCCACGCATGTCTGCGC
GAGT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGGATGCAGGGTTGACTCCCAGCTCCTGCTC
TTACCAATGAATTGGTAGATATCCGATGAGCTTTGATGACATGCTCCGAT
CTTAAAGTACAGCAAGGAAAGGTGTAGGACCAAATTTGAGCTCTACTAAA
AACACATTTTAAAAAGAAGAAAAAGGAGGAGAAGGAAGAGGAGGAGAGGA
AGAAGAAGCAGAAGTAGCAGCACATATTTCCATGGGGTGAAACACTAGAA
ATATAACCATTCCATAAATTTTATCAACAGTAAGCTATACCATTCATTCC
TGGATCATTTAAGTGATGGAGAGAGTAAGAATAGGTACCAGAGTCTGGGG
ATTTCATCCAGGGTTGATGGGGACCCAGAAGAGGTAGCAGCTTCAGAGTC
TTGGAGGATCCTTGATGGGCACTACTGGGAAACCAGTTTGTGTTTGAAAA
GAAAAAGAATTGGTGTAATCAGACTTATCCGTGCGGGATCTTTCTGTCTC
GTCTCTCCCTCCTTTCTTTTTTCCCCTTTTCTCCCACTGCTTCTAATTTT
CCTCTCTCCACCCTTCCCTGCCGTCCTTTTTCTTTTGTCCTCCTGTCACA
CACTATTTACTTGCTCTCCCTTTCTTACCCCTTTTTTCCGCTTTTGCGCT
CTCCCCCTCTATCTTATTGTTGCCCCGCTCCCCCCTTATTAACTTTTCAC
AAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_o04.g1 MSMg01no381_o04.g1 CHROMAT_FILE:
MSMg01no381_o04.g1 PHD_FILE: MSMg01no381_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:26 2005
         (360 letters)



>mm_chr8_77224184_77224943
          Length = 760

 Score =  646 bits (334), Expect = 0.0
 Identities = 354/364 (97%), Gaps = 8/364 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggatgcagggttgactcccagctcctgctcttaccaatgaattggtagatatccgatga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 755 aggatgcagggttgactcccagctcctgctcttaccaatgaattggtagatatctgatga 696

                                                                       
Query: 61  gctttgatgacatgctccgatcttaaagtacagcaaggaaaggtgtaggaccaaatttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gctttgatgacatgctccgatcttaaagtacagcaaggaaaggtgtaggaccaaatttga 636

                                                                       
Query: 121 gctctactaaaaacacattttaaaaagaagaaaaaggaggagaaggaagaggaggagagg 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gctctactaaaaacacatgttaaaaagaagaaaaaggaggagaaggaagaggaggagagg 576

                                                                       
Query: 181 aagaagaagcagaagtagcagcacatatttccatggggtgaaacactagaaatataacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 aagaagaagcagaagtagcagcacatatttccatggggtgaaacactagaaatataacca 516

                                                                       
Query: 241 ttccataa--a--ttttatcaacagtaagctataccattcattcctggatcatttaagtg 296
           ||||||||  |      |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ttccataagcagg----atcaacagtaagctataccattcattcctggatcatttaagtg 460

                                                                       
Query: 297 atggagagagtaagaataggtaccagagtctggggatttcatccagggttgatggggacc 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 atggagagagtaagaataggtaccagagtctggggatttcatccagggttgatggggacc 400

               
Query: 357 caga 360
           ||||
Sbjct: 399 caga 396


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space:   263601
Effective search space used:   263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)