BAC Information

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BAC

Clone NameMSMg01-382H08
Chromosome8 (Build37)
Map Location 129,569,291 - 129,569,454
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc35f3, LOC668434, 1810063B05Rik, EG619653, Irf2bp2, Tomm20, Rbm34, LOC100043368, Gabarapl2-ps8_1688.1
Downstream genePard3, EG628847
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382H08.T7 (MSMg01no382_h08.b1)MSMg01-382H08.TJ (MSMg01no382_h08.g1)
ACCAG486357AG486358
length818763
length of high quality
(start - end)		169 (56 - 224)288 (66 - 353)
definitionCHROMAT_FILE: MSMg01no382_h08.b1 PHD_FILE: MSMg01no382_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:12 2005CHROMAT_FILE: MSMg01no382_h08.g1 PHD_FILE: MSMg01no382_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTCACATTTC
TTCTCTTTCACAATCATGACCTTTGTGAGTGGTATTAAGTGTCCTCAATC
TGTACTCGCTCTTCAAAGTATAATGTCTCTTAAATATAGATTCACTTCCA
TAAGCATTTTTGAAAAATTAAACGCGCTGTTATCATGGTACTGCTTCGGG
GGCGGGGGAGGGGGAGGGGCAGNCTTCTTTTCTTTCTTTCTCGTTCTCTC
TAAGCACGTCGCCGCCGCTCCTCTTCGTTCCGCCTATACCCACCCCCTAC
CTCGTATTTTTTCTTTTNCATCTTCATACTGTGATTTTTTTATTTATTTT
CTTTCCTCTCCCCGTTGTTCTCTTTTGTTTTCACTTATTTTCTATATCTT
CCCACCCCCCCCCTGTGTCTGCTCACAAAGTTCTAATCACTTCTTTTCGC
CATCCACCTACTTGTTATCACTATCCCTTTTTCTACAATTCATTTCCCAT
ACCTCCATACTTTGCTATTATCCAACCTCCTCTTCCTCTCTTTTACTTCC
TCTTCTTTTTCCTCCCTCTGTACTTGCGATCACACCCCTATGTTATTTCC
ACCACACACACTTTTTATCATCCTCACTCTTTTTCTCACCATACCTTCTC
CTTCATCATCTGTCACAATTACTTTCTATCCTATTATATCCTTCACCCTA
TCTTCATTCTCTCTTTCTCTCCCCATCTTATTTATACTTTTCTCCTCTCC
ATTCCTTCTACTTCATTTTGTTTATTTCCCCCTTTCTGCCTTACTCTTTC
CGTCCTTCTTTTCCTTCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTGTAGAGAGTCCAGAGAGATGGCTCAGTGGTTAA
AAGCACTGGCTGTTCTTGCAGACCAGGGCTCAATTCCCAGTATTCACATG
GCTGCTCACAGCCATCTGTAACTCTGGTTCCAAGGGATCTAACACCCTCC
TCTTCTGGCCTCCATGGACACTGACCCATATGCACCCATATGCACTGATG
TGGTGCATATACACAGATGCAAGCAAGACAGCCAAACATGATATATATGT
GTGTATATATATATATATATATATATATATATATATATATATATATATAC
ACATATATAGAGAGAGTGGGGGGGGTGTGTGTGTGTGTGTAAATACAGGG
CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGGGGGAGGGAGAA
AGAGAGTGAGGTTTTTTTTCTATAGAGAGAGATATATATGCGTGTGTGTA
TATATGTATATATGGTGGAGTGTTGGGTGTGGGAGAAAAAGAGAGAGTGT
TTAAACTCTACTACCTATCAGTTAGTTATTCCGAATCTAATGTTTGCGTT
ATATATATATTTAATATATCACACATAGAGGTGTGCTGGGCGCTCCCCTT
TTCTTCCTCCTTTTATTTCTTTTTCGCTCTTTCTCCCATAAATAATACAT
TCTCTCTCTTTTTCCTTCTTTAACCCTATTGACCATATATTATGCTTATA
AACTTCTACCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_h08.b1 MSMg01no382_h08.b1 CHROMAT_FILE:
MSMg01no382_h08.b1 PHD_FILE: MSMg01no382_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:12 2005
         (169 letters)



>mm_chr8_129569091_129569659
          Length = 569

 Score =  317 bits (164), Expect = 2e-91
 Identities = 164/164 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcacaatcatgacctttgtgagtggtattaagtgtcctcaatctgtactcgctcttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tttcacaatcatgacctttgtgagtggtattaagtgtcctcaatctgtactcgctcttca 305

                                                                       
Query: 61  aagtataatgtctcttaaatatagattcacttccataagcatttttgaaaaattaaacgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 aagtataatgtctcttaaatatagattcacttccataagcatttttgaaaaattaaacgc 245

                                                       
Query: 121 gctgttatcatggtactgcttcgggggcgggggagggggagggg 164
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gctgttatcatggtactgcttcgggggcgggggagggggagggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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