BAC Information

Click to search

BAC

Clone NameMSMg01-382I01
Chromosome8 (Build37)
Map Location 52,731,279 - 52,731,877
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667517
Downstream geneLOC623872, LOC100040220, LOC623935, 1190028D05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382I01.T7 (MSMg01no382_i01.b1)MSMg01-382I01.TJ (MSMg01no382_i01.g1)
ACCAG486391AG486392
length728740
length of high quality
(start - end)
588 (34 - 621)599 (61 - 659)
definitionCHROMAT_FILE: MSMg01no382_i01.b1 PHD_FILE: MSMg01no382_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:16 2005CHROMAT_FILE: MSMg01no382_i01.g1 PHD_FILE: MSMg01no382_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCACCAT
GCTTTCCAAGTTCGACCAAAATATTATTTTAAAGGAAATTGTATTTTCTT
TAGAAAAATAATGTGAAATTTATAATTAAACCAAATTATGAAAGGGCCAG
ACCATTTCATATATACCCACATTTAGTTATCCCTATCATTGATGTTTTAA
ATGAGTGTAGTAAATCAGCTATAATGTGTTTATCAGTAGTTTTTCATTGT
TATTAACTATGCCTGTACTTTCAGACTACTTTGTACCTTTTTAGCACTTT
TTGCCTTCCAGAATTTTATCCAGTCTATAACATCATGTGTATATTCTATA
TTTCTGGTTTTCTGACCCATGAAAGTTTCTCAGAATATACATGTTTCTAA
TAAAATTTGACATAATTTGAGAAGTAGTAGGCAGACATTTTGTAAAATGT
CCCTCAATTTTTTTTTGCACCAAGGCCTCTTCGAGATTATATCTGTAATG
CAGTGTCTTGGAGAGAAAAAATTANAGATGGAAAAGCCATTTTTTCCCAT
ATCATATCTGTTATATCTAATCATCGTGGCCTAGCTCTGTTGATAGTGAC
CTTGACTATATGGCTGATACAACTTAGTTTGTTCCATAGATTTAATCCAG
GTATGAACTACTCCCTGTGCTTTCTGAATAGGCTATGTTGTCTGGGACCC
TCTAAGCATATGCTGGACTAAATAGTGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTAGTGAATATATTTTATGAAAAAATTTTCTAAATTAAAAA
ATTGGTTAAAAACAACAACAACAACAAAAACCCTCAATACCTATTGAAAT
GATAGAAAAAAAATACCCTAAAAACTAAACCTGGGTTATTTTTATCATAG
TGCCAGAAGGTATAGATATTATTTCCATGTAAGTATTAATTGGTGGACTT
AAGGAAAGATGGTGTTTATGTTTGTAAAACTTTTCTTTGAAAAGTCTGTT
AGGAGCATTGGATTCTTTTAACATCTTCTGGTGTATGAACTAAGTCAAGA
CAAGCAGGCTACAGGAGCACATTATTTTCCTAACCAGAGCCAATCCATGC
ACATAATTTGCTTATTTGGTCTATTTCTGGAACTTCATTTAGAAATGTAC
CTCATGCAGTGAAACATCTTCTTCCCTAAATCAAGACACTGTCTAAACAA
AACAAAACTATTTAAGGCTAAAGAACACAATAAGCTTGGAAACATGGTCT
GTTACAGAATAAATGGTACAGTGATAGGTCACAGTGGCCTGTGCTACCCA
TAAGAAAATGACCCCTGTACAAAGAAAGAGACTATGATGTTTCTATCTAG
GTTGGATATTTTTAAAGAAAGGAAATGACATTTTTGCTGNGATGCTATAC
CCCTAAGAAACTGATATATATATATTTATATGTGTGTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_i01.g1 MSMg01no382_i01.g1 CHROMAT_FILE:
MSMg01no382_i01.g1 PHD_FILE: MSMg01no382_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:16 2005
         (599 letters)



>mm_chr8_52731079_52732077
          Length = 999

 Score = 1120 bits (579), Expect = 0.0
 Identities = 594/599 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagtgaatatattttatgaaaaaattttctaaattaaaaaattggttaaaaacaacaaca 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagtgaatatattttatgacaaaattttctaaattaaaaaattggttaaaaacaacaaca 260

                                                                       
Query: 61  acaacaaaaaccctcaatacctattgaaatgatagaaaaaaaataccctaaaaactaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaacaaaaaccctcaatacctattgaaatgatagaaaaaaaataccctaaaaactaaac 320

                                                                       
Query: 121 ctgggttatttttatcatagtgccagaaggtatagatattatttccatgtaagtattaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 ctgggttatttttatcatagtgccagaaggtatagatattatttccatgtaagcattaat 380

                                                                       
Query: 181 tggtggacttaaggaaagatggtgtttatgtttgtaaaacttttctttgaaaagtctgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggtggacttaaggaaagatggtgtttatgtttgtaaaacttttctttgaaaagtctgtt 440

                                                                       
Query: 241 aggagcattggattcttttaacatcttctggtgtatgaactaagtcaagacaagcaggct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggagcattggattcttttaacatcttctggtgtatgaactaagtcaagacaagcaggct 500

                                                                       
Query: 301 acaggagcacattattttcctaaccagagccaatccatgcacataatttgcttatttggt 360
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaggcgcacattattttcctaaccagagccaatccatgcacataatttgcttatttggt 560

                                                                       
Query: 361 ctatttctggaacttcatttagaaatgtacctcatgcagtgaaacatcttcttccctaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctatttctggaacttcatttagaaatgtacctcatgcagtgaaacatcttcttccctaaa 620

                                                                       
Query: 421 tcaagacactgtctaaacaaaacaaaactatttaaggctaaagaacacaataagcttgga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcaagacactgtctaaacaaaacaaaactatttaaggctaaagaacacaataagcttgga 680

                                                                       
Query: 481 aacatggtctgttacagaataaatggtacagtgataggtcacagtggcctgtgctaccca 540
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 681 aacatggtctgttacagaataaatggtgcagtgataggtcacagtggcctgtgctaccca 740

                                                                      
Query: 541 taagaaaatgacccctgtacaaagaaagagactatgatgtttctatctaggttggatat 599
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 741 taagaaaatgacccctgtacaaagaaagagagtatgatgtttctatctaggttggatat 799


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)