Query= MSMg01no384_e17.b1 MSMg01no384_e17.b1 CHROMAT_FILE:
MSMg01no384_e17.b1 PHD_FILE: MSMg01no384_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:34 2005
(542 letters)
>mm_chr8_9411046_9411987
Length = 942
Score = 984 bits (509), Expect = 0.0
Identities = 530/539 (98%), Gaps = 5/539 (0%)
Strand = Plus / Plus
Query: 7 gaattctttac---ttgctcattttctgtaattatattcttcctgcttttctgcacatga 63
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctttacaggtt--tcattttctgtaattatattcttcctgcttttctgcacatga 263
Query: 64 cttaatactttgacacattgcagatgtaaaaggtgattataaaattgggatattctttat 123
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 264 cttaatactttgacacattgcagatgtaaaagatgattataaaattgggatattctttat 323
Query: 124 ccatggaaaaatcaccagaatctctcagtaagaaaataacaaaaatgttcagtttatgat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccatggaaaaatcaccagaatctctcagtaagaaaataacaaaaatgttcagtttatgat 383
Query: 184 tgattttgaaaaggagttttgcttgatactttcctctactgtgcattttaacttagaaat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgattttgaaaaggagttttgcttgatactttcctctactgtgcattttaacttagaaat 443
Query: 244 attgttttatacaatgaattttcaacagggttctaatcctttcgaaacatagacatgcag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 attgttttatacaatgaattttcaacagggttctaatcctttcgaaacatagacatgcag 503
Query: 304 gcagaacaaccggtgagcattcatatcactcttctgggtggtaggtaactgacaggttgg 363
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gcagaacaacctgtgagcattcatatcactcttctgggtggtaggtaactgacaggttgg 563
Query: 364 aatttaacatttctatttcacagacatcagaagactgtgttaaacagctccagtatgaga 423
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 564 aatttaacatttctatttcacagacatcagaagactgtgttaaacagcaccagtatgaga 623
Query: 424 accagcaggaaaccatcaactgggcaagcacctcaccttcattttcctgggtctgagcat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 accagcaggaaaccatcaactgggcaagcacctcaccttcattttcctgggtctgagcat 683
Query: 484 gcttaaattccacaaatctgtcattttatcttcatccttattatcctacaccatggttt 542
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 684 gcttaaattccacaaatctgtcattttatctttatccttattatcctacaccatggttt 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_e17.g1 MSMg01no384_e17.g1 CHROMAT_FILE:
MSMg01no384_e17.g1 PHD_FILE: MSMg01no384_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:34 2005
(496 letters)
>mm_chr8_9550444_9551340
Length = 897
Score = 847 bits (438), Expect = 0.0
Identities = 483/498 (96%), Gaps = 3/498 (0%)
Strand = Plus / Minus
Query: 1 ttggctctctcagggttacgatgattaaagcctccccctttattaagcatctttaaaata 60
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 697 ttggctctctcggggttacgatgattaaagcccccccctttattaagcatctttaaaata 638
Query: 61 aaagcgtgagcagcccctttcaaattcacatcctttttggcatcctgtgtagaagctact 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 aaagcgtgcgcagcccctttcaaattcacatcctttttggcatcctgtgtagaagctact 578
Query: 121 cagggttctgtctgttttagttttagttttgctttgttttatttctgtaacattttcgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 577 cagggttctgtctgttttagttttagttttgctttgttttatttctgtaacatttccgaa 518
Query: 181 ttggcaggatctctttagacaattctttcctggatgaggaaaaagagctacaactggaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ttggcaggatctctttagacaattctttcctggatgaggaaaaagagctacaactggaat 458
Query: 241 catgtttaggatattatttaaaatg-gacagtacttcttttgaaagaccatagagaatgc 299
||||||| ||||||||||||||| | ||||||| ||||||||||||||||||||||||||
Sbjct: 457 catgtttgggatattatttaaaa-gagacagtatttcttttgaaagaccatagagaatgc 399
Query: 300 ccttgagcaaactgaagagaaacatttaccttttcaaatgcaaagtgtgctggc-aaatg 358
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 398 ccttgggcaaactgaagagaaacatttaccttttcaaatgcaaagtgtgctggcaaaatg 339
Query: 359 actctagttaatcaccctttcctttgctgtgcaattgtgaagactctgcatcaatttgcc 418
|||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||
Sbjct: 338 actctagttaatcaccctttcctttgctgtgcaattgtgaagactccgcgtcaattcgcc 279
Query: 419 tcttaataataaaagagatgtttcataaaatgcaaaaaacagtgaagcatttcccaggca 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tcttaataataaaagagatgtttcataaaatgcaaaaaacagtgaagcatttcccaggca 219
Query: 479 tctccacactaccgaaga 496
|||| ||||||| |||||
Sbjct: 218 tctctacactactgaaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 897
Length adjustment: 10
Effective length of query: 486
Effective length of database: 887
Effective search space: 431082
Effective search space used: 431082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
