Query= MSMg01no384_h07.b1 MSMg01no384_h07.b1 CHROMAT_FILE:
MSMg01no384_h07.b1 PHD_FILE: MSMg01no384_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:45 2005
(468 letters)
>mm_chr8_107519662_107520527
Length = 866
Score = 845 bits (437), Expect = 0.0
Identities = 458/465 (98%), Gaps = 2/465 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaattataggtgtgggtggctcttggatcctgggtggtaaaggaggaagggaaa 63
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaattagaggtgtgggtggctcttggatcctgggtggtaaaggaggaagggaaa 263
Query: 64 gagacctggagttcagggtcgggctgcagtaagaatggagactgtggagcatatgtaggc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gagacctggagttcagggtcgggctgcagtaagaatggagactgtggagcatatgtaggc 323
Query: 124 agctgcatcaggaggctgggacctgaacctttgtcttcccattcactacagttgacctca 183
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agctgcatcaggagtctgggacctgaacctttgtcttcccattcactacagttgacctca 383
Query: 184 ctgcggaggagaagctgctgagcagaagcatcatgaagtactgggccaactttgcatggc 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 384 ctgcggaggagaagctgctgagcagaagcatcatgaagtactgggccaactttgcacggc 443
Query: 244 ataggtgagaacacgccctttccccaacctcctcagtggtgagtccctatctagggctcc 303
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ataggtgaga-c-cgccctttccccaacctcctcagtggtgagtccctatctagggctcc 501
Query: 304 atttgtgattgatgatctcattaacatgaatggataattcatcacatggtagagtcacct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 atttgtgattgatgatctcattaacatgaatggataattcatcacatggtagagtcacct 561
Query: 364 caccccagggcacgcttagatatattgtacatattggttattcatcatactccagtgacc 423
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 562 caccccagggcacacttagatatattgtacatattgcttattcatcatactccagtgacc 621
Query: 424 tggcaggtgccatggtactgttccttaaattttccctctgagaca 468
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tggcaggtgccatggtactgttccttaaattttccctctgagaca 666
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 866
Length adjustment: 10
Effective length of query: 458
Effective length of database: 856
Effective search space: 392048
Effective search space used: 392048
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_h07.g1 MSMg01no384_h07.g1 CHROMAT_FILE:
MSMg01no384_h07.g1 PHD_FILE: MSMg01no384_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:45 2005
(490 letters)
>mm_chr8_107743800_107744690
Length = 891
Score = 917 bits (474), Expect = 0.0
Identities = 488/494 (98%), Gaps = 5/494 (1%)
Strand = Plus / Minus
Query: 1 caggacagccagggctatacagagaaaccctgtttcgaaaaacc--aaaaaaaaaaaaaa 58
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 741 caggacagccagggctatacagagaaaccctgtttcgaaaaaccaaaaaaaaaaaaaaaa 682
Query: 59 aaaaaaaggtacaanttttttaaaaattgcagtgcctatacatttcccccttaaca--ga 116
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 681 aaaaaaaggtacaa-ttttttaaaaattgcagtgcctatacatttcccccttaacactga 623
Query: 117 gtctccatacccaccaggccactatatctaaaagatcactttgatctttaaccaaaaaat 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gtctccatacccaccaggccactatatctaaaagatcactttgatctttaaccaaaaaat 563
Query: 177 ttctcaaacctcctaatctgttggccacttcttgtcctggtccaaatgtcttccatttga 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ttctcaaacctcctaatctgttggccacttcttgtcctggtccaaatgtcttccatttga 503
Query: 237 ttgacataatacattgagcactgctcctgtctcacccatgctgtagcccttatctgatgc 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttgacataatacattgagcactgctcctgtctcacccatgctgtagcccttatctgatgc 443
Query: 297 tctttcaaacctgctaagctctgaccagccggctatgtgcattcagtatcttctctagtt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tctttcaaacctgctaagctctgaccagccggctatgtgcattcagtatcttctctagtt 383
Query: 357 gattgtagctttcggctcggaagtctcctcaggttgattgactctaactacccagaccag 416
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gattgtagctttcggcttggaagtctcctcaggttgattgactctaactacccagaccag 323
Query: 417 cacagacagtgcaactgccaaggcttcctatataatttaaaggttgctactacattggat 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cacagacagtgcaactgccaaggcttcctatataatttaaaggttgctactacattggat 263
Query: 477 caattttgggcata 490
||||||||||||||
Sbjct: 262 caattttgggcata 249
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 891
Length adjustment: 10
Effective length of query: 480
Effective length of database: 881
Effective search space: 422880
Effective search space used: 422880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
