Query= MSMg01no384_o08.b1 MSMg01no384_o08.b1 CHROMAT_FILE:
MSMg01no384_o08.b1 PHD_FILE: MSMg01no384_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:18 2005
(582 letters)
>mm_chr8_66613454_66614435
Length = 982
Score = 1104 bits (571), Expect = 0.0
Identities = 580/583 (99%), Gaps = 1/583 (0%)
Strand = Plus / Plus
Query: 1 cagagcttataggataaaaagagaaaactgggtctggcatgttgtcttttgctacacgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 cagagcttataggataaaaagagaaaactgggtctggcatgttgtcttttgctacacgca 259
Query: 61 tacttgccctgtcacacatacatgtgagtaagcaagtaaaaaa-taaaataaataaacag 119
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 260 tacttgccctgtcacacatacatgtgagtaagcaagtaaaaaaataaaataaataaacag 319
Query: 120 ataaataaacacaacatgaaaaatcaaactaaaaagtacacccccttcttgcagttatta 179
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 320 ataaataaacacaacatgaaaaatcaaactaaaaagcacacccccttcttgcagttatta 379
Query: 180 tcagatgccaggtccaccctttgatagaagtaagcttttttttttccctcagtacatata 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcagatgccaggtccaccctttgatagaagtaagcttttttttttccctcagtacatata 439
Query: 240 caatttcataagtatacatagatctgaagtggaagctttaattgttaaactttctattca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 caatttcataagtatacatagatctgaagtggaagctttaattgttaaactttctattca 499
Query: 300 aagtcatcatagtgtttacactacagaaaagtctctcatggaaactgactgaatagatgg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aagtcatcatagtgtttacactacagaaaagtctctcatggaaactgactgaatagatgg 559
Query: 360 ttacttcctttacatggctgcagaaatggaaatgttgcattgatatctggagatgatccc 419
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttacttcctttacacggctgcagaaatggaaatgttgcattgatatctggagatgatccc 619
Query: 420 ttcttgaaaaatagaaactacctgccaagaaagcattcgataaagaataatggattggat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttcttgaaaaatagaaactacctgccaagaaagcattcgataaagaataatggattggat 679
Query: 480 tctaactttagacatgataatgataaaacctatgtcctgagagtgatttttttaacacct 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tctaactttagacatgataatgataaaacctatgtcctgagagtgatttttttaacacct 739
Query: 540 gtttaatcattctgccagtactgtttcaagccttgtctggaat 582
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gtttaatcattctgccagtactgtttcaagccttgtctggaat 782
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space: 555984
Effective search space used: 555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_o08.g1 MSMg01no384_o08.g1 CHROMAT_FILE:
MSMg01no384_o08.g1 PHD_FILE: MSMg01no384_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:18 2005
(639 letters)
>mm_chr8_66790537_66791573
Length = 1037
Score = 1154 bits (597), Expect = 0.0
Identities = 627/637 (98%), Gaps = 2/637 (0%)
Strand = Plus / Minus
Query: 1 tgtgttaaatgttttgaatcccgaaaacatggagacattcagggcattttctgtaaggtg 60
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 835 tgtgttaaatgttttgaatcccaaaaacatggagacattcagggcattttctataaggtg 776
Query: 61 ataactgatacccttaaagagtaaaactgtagactcagagatgggcaatgctcatatgat 120
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 775 ataactgatacccttaaagagcaaaact-tagactcagagatgggcaatgctcatatgat 717
Query: 121 gttgattcccaggtgcccccttaggctatactatgagggaagagagccagttgacccaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 gttgattcccaggtgcccccttaggctatactatgagggaagagagccagttgacccaca 657
Query: 181 agaagctagttgacctcgttttggttgtggcatcaaaaccacgttgttatatcccagaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 agaagctagttgacctcgttttggttgtggcatcaaaaccacgttgttatatcccagaag 597
Query: 241 catgtggaccgcacttggatcaaaaacagaactgcagagcatgcagtagaacttggtcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 catgtggaccgcacttggatcaaaaacagaactgcagagcatgcagtagaacttggtcat 537
Query: 301 aaaaaggtgtttccttttcatctgtataaaccttcactgaccatattagcttcagggttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 aaaaaggtgtttccttttcatctgtataaaccttcactgaccatattagcttcagggttc 477
Query: 361 actttgaactttgtgaggaaagcagatttccttgcgattattttttaattaatactctcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 actttgaactttgtgaggaaagcagatttccttgcgattattttttaattaatactctcc 417
Query: 421 acacatcttttgttatttataaacaattcaattcttcccaaaacttgattttatggattg 480
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 416 acacatctttcgttatttataagcaattcaattcttcccaaaacttgattttatggattg 357
Query: 481 ttctaggtttcgcattgccatcacttcttggcacaaaattatgttaatatattaaaaaaa 540
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 356 ttctaggtttctcattgccatcacttcttggcacaaaattatgttaatatatttaaaaaa 297
Query: 541 agagcatgacagtgtagattctgaaatggaaatataattcagttggaaacaggaggctga 600
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 296 -gagcatgacagtgtagattctgaaatggaaatataattcagttggaaccaggaggctga 238
Query: 601 cattaaaatgtcaatggattcccttattcattttttt 637
|||||||||||||||||||||||||||||||||||||
Sbjct: 237 cattaaaatgtcaatggattcccttattcattttttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1037
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1027
Effective search space: 645983
Effective search space used: 645983
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
