BAC Information

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BAC

Clone NameMSMg01-384P03
Chromosome8 (Build37)
Map Location 73,795,822 - 73,796,344
singlet/doubletsinglet
Overlap gene2410004L22Rik
Upstream geneHomer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377
Downstream geneMyo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374, Tpm4, Rab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384P03.T7 (MSMg01no384_p03.b1)MSMg01-384P03.TJ (MSMg01no384_p03.g1)
ACCAG488261AG488262
length762732
length of high quality
(start - end)		454 (35 - 488)527 (66 - 592)
definitionCHROMAT_FILE: MSMg01no384_p03.b1 PHD_FILE: MSMg01no384_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:22 2005CHROMAT_FILE: MSMg01no384_p03.g1 PHD_FILE: MSMg01no384_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTT
TAACTTTGTACCCCATTTAAAATTTTTTTCTTTTTGTTTTTTTTTTGGAG
ACAGGGTTTCTATGTATAGCCCTCGCTGTCCTGGAACTCACTTTGTAGAC
CAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCT
GGGATTAAAGGCGTGTGCCACCACACCGGGCTGTACCCCATTTTTAATAG
GGTTATTTGATTTTCTGGAGTCTATCTTCTTGAGTTCTTTATATATTGGA
TATTAGTCCCCTATCTGATTTAGAATTGGTAAAGACACTTTCCCAATCTG
TTGGTGGCCTTTTTGTCTTATTGACAGTGTCTTTTGCCTTACAGAAGCTT
TGCAATTTTATGAGGTCCCATTTGTCAATTCTTGACCTTACAGCACAAGC
CATTGCTGTTGTGTTCAGGAATTCCCCCCCCCCCTGCCATGCCCATATCT
TCTAGGCTCCTCCCCCTCTGTCGTATTTTTCCTCTATAATTTTTTTCACT
CTCTGTCCTTATGCGTACTACCCTCGAATCTTTTGTATAATCTGCCCCCA
GTACATGTAACACATGTATGGATTTTATTCTGCGCTTATCGTCCAATGAC
TCTTAACATTTATATTAACTATTGCGCATATTTTTTCTCCTTTTGCGACG
CTTTTTCTTATTCCTGTTGACACAAATATTACAGGCACCTATTAAGTTCT
CATCTTTTATCA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAAGGCCAGACTGGTCTACAGAGCTCCGGATCAGCT
ACACACATACACACACACACACACACACACACACACACACACACACACAC
ACACAAAACAAAAAACAAAAAACACCACTGTCTCCAAGGGGAAAAAGAGA
GAATGTCCACCAAAGTCCACGCACAACCCCAATTCTGAACTGCATCTGGG
ACCCCAGCTCCCCAGCACGCACCGAAGCGGCTCAGAGCCTGGGCTTCTGG
TCTGGGAGAGATTCGGGCATTGGCTCATAAGATCCCAGTTCTCCAGCTCC
GCTGCCTGTGAGCCCAGGATCTGGTCTTTGGCCAACCCACAGGAGCCCCT
AAATTCCGCCCTTCTGAGATCCCAACTCACCCTGCGTCCCGTTCTGAGGA
ATCCGCCATTCTCCCGCCTTCCACTCAAAGGCAAGCGTCTCAGGGTCCCG
CCCGCTAGGAGGCAGGGAGTAGTGCTGGAAGCCGGAGGGTGCTCTCTTCA
CGCGAGCCGCGGGGCGGGCTCCAAGCTTGCTACAGTTCGTTCAGCCTGGT
CAAGAGCGCCGAAAAAGGGCGTGGCTCCAAGGTGTCCCTCAAACGTGCGG
TCTTTCGCGCCCAACCTGAGCGGGCTAAATACTGCTGGGGAAGGCCCCCT
TCTCTATTTTTTTCCCCCTTCTCCTTTATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_p03.g1 MSMg01no384_p03.g1 CHROMAT_FILE:
MSMg01no384_p03.g1 PHD_FILE: MSMg01no384_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:22 2005
         (527 letters)



>mm_chr8_73795618_73796544
          Length = 927

 Score = 1000 bits (517), Expect = 0.0
 Identities = 523/527 (99%), Gaps = 4/527 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggccagactggtctacagagctccggatcagctacacacatacacacacacacacaca 60
           |||||||||||||||||||||||||||||||||||||||||||    |||||||||||||
Sbjct: 205 aaggccagactggtctacagagctccggatcagctacacacat----acacacacacaca 260

                                                                       
Query: 61  cacacacacacacacacacacacacacacaaaacaaaaaacaaaaaacaccactgtctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacacacacacacacacacacacacacacaaaacaaaaaacaaaaaacaccactgtctcc 320

                                                                       
Query: 121 aaggggaaaaagagagaatgtccaccaaagtccacgcacaaccccaattctgaactgcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggggaaaaagagagaatgtccaccaaagtccacgcacaaccccaattctgaactgcat 380

                                                                       
Query: 181 ctgggaccccagctccccagcacgcaccgaagcggctcagagcctgggcttctggtctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgggaccccagctccccagcacgcaccgaagcggctcagagcctgggcttctggtctgg 440

                                                                       
Query: 241 gagagattcgggcattggctcataagatcccagttctccagctccgctgcctgtgagccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagagattcgggcattggctcataagatcccagttctccagctccgctgcctgtgagccc 500

                                                                       
Query: 301 aggatctggtctttggccaacccacaggagcccctaaattccgcccttctgagatcccaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggatctggtctttggccaacccacaggagcccctaaattccgcccttctgagatcccaa 560

                                                                       
Query: 361 ctcaccctgcgtcccgttctgaggaatccgccattctcccgccttccactcaaaggcaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcaccctgcgtcccgttctgaggaatccgccattctcccgccttccactcaaaggcaag 620

                                                                       
Query: 421 cgtctcagggtcccgcccgctaggaggcagggagtagtgctggaagccggagggtgctct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cgtctcagggtcccgcccgctaggaggcagggagtagtgctggaagccggagggtgctct 680

                                                          
Query: 481 cttcacgcgagccgcggggcgggctccaagcttgctacagttcgttc 527
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttcacgcgagccgcggggcgggctccaagcttgctacagttcgttc 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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