BAC Information

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BAC

Clone NameMSMg01-385F02
Chromosome8 (Build37)
Map Location 95,294,286 - 95,454,133
singlet/doubletdoublet
Overlap geneMmp2, Aytl1, Capns2, LOC100040752
Upstream geneIrx3, 4933436C20Rik, Irx5, Irx6, LOC100041325
Downstream geneSlc6a2, EG244595, LOC382044, Es1, LOC676523, Ces3, Es22, AU018778, Ces1, 2310039D24Rik, Ces7, Gnao1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385F02.T7 (MSMg01no385_f02.b1)MSMg01-385F02.TJ (MSMg01no385_f02.g1)
ACCAG488546AG488547
length754827
length of high quality
(start - end)
546 (28 - 573)145 (58 - 202)
definitionCHROMAT_FILE: MSMg01no385_f02.b1 PHD_FILE: MSMg01no385_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:51 2005CHROMAT_FILE: MSMg01no385_f02.g1 PHD_FILE: MSMg01no385_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,294,286 - 95,294,827)(95,453,994 - 95,454,133)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACTTGATGCGAT
GCAAGTTCATTCAACTCCCACGTGTTGAAGATGTATGATGACCACAGGTC
TACAGGGAGGAGGTCTTGGTAGAATGAATGACAGCTTTGTTAGTGACTGT
GAAGTGACAGAAAATGTGGTGGACATGCCAAGATGGTCCACTCCAACAAC
TTGGCTTTGTTTTGAATTAACCAGAGTTAAGCTAACTGTCTGATTTGAGC
AGACAGAAACAGGGGAATGACTGAAGAAAAACTATTTAATAAACAAATGG
ACTAATTTTCTATGTGTGGTACTGGAGTTTGTACTTAGAATCTTGTACAT
GTTAGGCATGTGCTCCACTGCACACCTACGTCCTCAGCTCTTGGCTTTTT
GAGACAGAGTCTCACCATGTACCCAGACTGTCCTTAAACTCACAATCCTC
TTGTCCTAGCTTTCCAAGTTCTGGGATTACAAGAATATACCACCATACCT
AGCTTCACGTTACTAATATAGTGGTTAATATAAGAATGGCCCCCATAGGC
TCATATATTTGAATGCTTAGTCACCAGGAAGTGGCACTACTTGATAGGAT
TGGAAGGGTTAACAGGTGTGCTCTTGTTGGAGAAGAGTGTCAATAGCATT
GGGCTTTGGAGGTTCAGCCATATCAGACCTAAGCTGTCTGTTTTTCCGTC
CGACTCTCTTCCCTTTCCTCCTCCCCCCTCTCCTAAAAGATGTATACCCC
ACCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAAGATTCTTGCCTCTTATATCCAGGACTTTAAAGAATGAAATT
TGTGGAACACAAAGGATGAGTTTTAGAGGGAAGTAGAGTGTCATTTACTA
CAGATTTATAGGTGAAAGCCTAAGGGATGTGTGGGTGGGTGTGGTGGGGT
CGGNAGTAGGNNGAGGGGTTCGGGATTTGAGTGTCTTGTTCGTGGGTGGC
GCGGTCCCCTGCCTCTTGTGCGTGCTTGGGTGTCTTGTTCGTCTGGGACC
ACTTGTTTTTGTCGCTCCGCTTTTTTACCCTCGCCTTGTTCTTTCTCTTC
ATTCCCTTTCTTTTTTTCTGCTTTTTTTTTTCCCCCCTCTGATTGTTTTT
TTTGTGTTCTTTTTTTTGTTGTATTTTTTTGACCCCCTTTCTCGCTTTTT
CCGTCCCTCCGTCTTTGCCCCTTTTTTACATATCACTTTCCTCCTTGTCC
TTCTTTCTCTCTCTTTTTTCTCCCTCTCTATATTTTTCTCCTTTTTCTTT
CTCTTTCCTCCCTCTTTTCCTCTCTCTCCCTCCTTTTTGCTCTTATCTTC
TCCTCTTCGTCTGTTTTCCCCCTGTTTTTTCTCTTCCTTTCTTCTTTTGT
GTTTCGCCTTTCCCCCTTCTATTAGCTCCTCTTTTTCCCTCCTTTTCCAC
CTTACTTCCATCTATCACCATTTGTTCCCACCGCCCCCCTATATCTTACT
TTCTCACCTATTTTTCATCTCCTTTCCCGCTTCTCTTTGCCTCCTTTTGT
TGTCTCCCTGCTTATTTTCGTCTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_f02.b1 MSMg01no385_f02.b1 CHROMAT_FILE:
MSMg01no385_f02.b1 PHD_FILE: MSMg01no385_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:51 2005
         (546 letters)



>mm_chr8_95294082_95295027
          Length = 946

 Score = 1048 bits (542), Expect = 0.0
 Identities = 542/542 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacttgatgcgatgcaagttcattcaactcccacgtgttgaagatgtatgatga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacttgatgcgatgcaagttcattcaactcccacgtgttgaagatgtatgatga 264

                                                                       
Query: 65  ccacaggtctacagggaggaggtcttggtagaatgaatgacagctttgttagtgactgtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccacaggtctacagggaggaggtcttggtagaatgaatgacagctttgttagtgactgtg 324

                                                                       
Query: 125 aagtgacagaaaatgtggtggacatgccaagatggtccactccaacaacttggctttgtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagtgacagaaaatgtggtggacatgccaagatggtccactccaacaacttggctttgtt 384

                                                                       
Query: 185 ttgaattaaccagagttaagctaactgtctgatttgagcagacagaaacaggggaatgac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgaattaaccagagttaagctaactgtctgatttgagcagacagaaacaggggaatgac 444

                                                                       
Query: 245 tgaagaaaaactatttaataaacaaatggactaattttctatgtgtggtactggagtttg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgaagaaaaactatttaataaacaaatggactaattttctatgtgtggtactggagtttg 504

                                                                       
Query: 305 tacttagaatcttgtacatgttaggcatgtgctccactgcacacctacgtcctcagctct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tacttagaatcttgtacatgttaggcatgtgctccactgcacacctacgtcctcagctct 564

                                                                       
Query: 365 tggctttttgagacagagtctcaccatgtacccagactgtccttaaactcacaatcctct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tggctttttgagacagagtctcaccatgtacccagactgtccttaaactcacaatcctct 624

                                                                       
Query: 425 tgtcctagctttccaagttctgggattacaagaatataccaccatacctagcttcacgtt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgtcctagctttccaagttctgggattacaagaatataccaccatacctagcttcacgtt 684

                                                                       
Query: 485 actaatatagtggttaatataagaatggcccccataggctcatatatttgaatgcttagt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 actaatatagtggttaatataagaatggcccccataggctcatatatttgaatgcttagt 744

             
Query: 545 ca 546
           ||
Sbjct: 745 ca 746


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space:   501696
Effective search space used:   501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no385_f02.g1 MSMg01no385_f02.g1 CHROMAT_FILE:
MSMg01no385_f02.g1 PHD_FILE: MSMg01no385_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:52 2005
         (145 letters)



>mm_chr8_95453794_95454338
          Length = 545

 Score =  271 bits (140), Expect = 1e-77
 Identities = 140/140 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagattcttgcctcttatatccaggactttaaagaatgaaatttgtggaacacaaaggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 aagattcttgcctcttatatccaggactttaaagaatgaaatttgtggaacacaaaggat 281

                                                                       
Query: 61  gagttttagagggaagtagagtgtcatttactacagatttataggtgaaagcctaaggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gagttttagagggaagtagagtgtcatttactacagatttataggtgaaagcctaaggga 221

                               
Query: 121 tgtgtgggtgggtgtggtgg 140
           ||||||||||||||||||||
Sbjct: 220 tgtgtgggtgggtgtggtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 145
Length of database: 545
Length adjustment: 8
Effective length of query: 137
Effective length of database: 537
Effective search space:    73569
Effective search space used:    73569
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)