CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAGTATATCTCCATTTCTGAGCAATTATGGAACTTATTAATTTC
TATTTTCTTCAAAGTTTATGACATGTACATGTAAATTGGTATTCCTCTGA
CAGCTTAGGTTGAGTCCTGGGAGAGCAGCACAAACACTATTTTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTCGATCTTGTGGTAGATTGTTCCCTC
CTCAAGTCACACGAATGAAAGCTCACACAGTTCAGGCCAAGCATTGATAA
AGTATGTTTATAAAGCTGTTTCTTGTGCAGAGACTGGGCTAATGGTTTAA
CTCAAAGTGGTAAGATCAATACCTTTAAAGGCAACGAACGTCACTGAGCT
TTACCGCTGGGCTGCTGACGCACACGTAGCCTTTTAAGTTCAGTCATTTA
CTAATTAGAAAAACGATGCTCATTTATTAAAATTTTAGTTAAACAATACA
TTTGATTTGCTGATGGGCAACATATAACTTTTCCATAGTGATTAATCTTT
TTTTTTTTTTTTTTTTTGGCATCCCAGTTTTACTCTTCCAGAACAGAAAC
ACTACTTCTTGGGTTCATAAACCCGGCAATGAAAGCTGTCTTTAGGGCTG
GGTGCCCTGCTCCTCCTGGCAGTCCACACTCTTCGGGTAAGCTGATTGGC
CCTGCTTGTCCACAGT

CTCGATGAAGTGGGAGGCCTGGCGGNCGCCTGTTTCCGACTGGAGGTGAC
CTATAGAAGTAACAACACACTCTCTGGAACTGGATTACATAGTTATGAGA
CATCAGGTGGGTGCTGACACTTGAACCTGGGTCTTCTGAAGAGCATCGAG
TGCTCTTAAATGACTAAATCATCTTTCTAGTCCTCAAAATATGACTTTTA
TACTGAAGGTTATGTTTTCTTTTTTCTTTTCTTTTTCTACTGGTTTTTTC
TCATGGTTTTTCTTTTCTTCCTGTTCTTTTTTTTCCCCATTCTGGAGATA
TTATTAAAGAGAATGAATGNATTTTATTATGNGAATTTCTATGGAGTTCA
TGATACTTATGTGACTGCTACATAGATAGATAGATAGATAGATAGATAGA
TAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAAGAT
GTTCTTCTTATTTATACCTTCTATCATCTCTTCATTTCTTTACATTACTC
TCTTTCCTCCTTCTTTTTTCTTATCCTCGATTTATATTCTATTTTCTCTC
GTCTCTTTTTTTCCCTCCTTTTCAATCTACCCTTCTTTCTTTCTTTTCCC
TATTTTTTTTTTTCCCCCACTTTTTTCCCTTTCCTTTTCCCCCCGCCTAA
TTTATCATTTTTTTTTTTTCTTTTTTCAATCCTCATTTTTTCTCTATTTC
ACCACTCTCCTCTCGCTCTTTCTTTTCCTCCCTTTCCTCTTCTCCCCN

Query= MSMg01no386_f12.b1 MSMg01no386_f12.b1 CHROMAT_FILE:
MSMg01no386_f12.b1 PHD_FILE: MSMg01no386_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:08 2005
         (574 letters)



>mm_chr8_131208198_131209171
          Length = 974

 Score = 1009 bits (522), Expect = 0.0
 Identities = 557/572 (97%), Gaps = 7/572 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagtatatctccatttctgagcaattatggaacttattaatttctattttcttc 64
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcaagtatagctacatttctgagcaattatggaacttattaatttctattttcttc 262

                                                                       
Query: 65  aaagtttatgacatgtacatgtaaattggtattcctctgacagcttaggttgagtcctgg 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaagtttatgacttgtacatgtaaattggtattcctctgacagcttaggttgagtcctgg 322

                                                                       
Query: 125 gagagcagcacaaacactattt--tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcga 182
           ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 323 gagagcagcacaaacactattttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcga 382

                                                                       
Query: 183 tcttgtggtagattgttccctcctcaagtcacacgaatgaaagctcacacagttcaggcc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tcttgtggtagattgttccctcctcaagtcacacgaatgaaagctcacacagttcaggcc 442

                                                                       
Query: 243 aagcattgataaagtatgtttataaagctgtttcttgtgcagagactgggctaatggttt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aagcattgataaagtatgtttataaagctgtttcttgtgcagagactgggctaatggttt 502

                                                                       
Query: 303 aactcaaagtggtaagatcaatacctttaaaggcaacgaacgtcactgagctttaccgct 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aactcaaagtggtaagatcaatacctttaaaggcaacgaacgtcactgagctttaccgct 562

                                                                       
Query: 363 gggctgctgacgcacacgtagccttttaagttcagtcatttactaattagaaaaacgatg 422
           ||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gggctgccgatgcagacgtagccttttaagttcagtcatttactaattagaaaaacgatg 622

                                                                       
Query: 423 ctcatttattaaaattttagttaaacaatacatttgatttgctgatgggcaacatataac 482
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 623 ctcatttattaaaattttagttaaacaatacatttgatttgctcatgggcaacatataac 682

                                                                       
Query: 483 ttttccatagtgattaatcttttttttttttttttttttggcatcccagttttactcttc 542
           ||||||||||||||||||||||||||||||||||     |||||||||||||||||||||
Sbjct: 683 ttttccatagtgattaatcttttttttttttttt-----ggcatcccagttttactcttc 737

                                           
Query: 543 cagaacagaaacactacttcttgggttcataa 574
           |||||||||||||||| |||||||||||||||
Sbjct: 738 cagaacagaaacactatttcttgggttcataa 769


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)