Query= MSMg01no386_m13.b1 MSMg01no386_m13.b1 CHROMAT_FILE:
MSMg01no386_m13.b1 PHD_FILE: MSMg01no386_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:40 2005
(579 letters)
>mm_chr8_112424148_112425124
Length = 977
Score = 1079 bits (558), Expect = 0.0
Identities = 574/580 (98%), Gaps = 4/580 (0%)
Strand = Plus / Plus
Query: 1 gatcagtgaaagactgtttccctcttctcagttcccaagtccagagacattcagagttaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatcagtgaaagactgtttccctcttctcagttcccaagtccagagacattcagagttaa 260
Query: 61 ccgaaggaaagaaaatgtttcaagttttatctgtgagcaaaatgctaagtaatcagtttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccgaaggaaagaaaatgtttcaagttttatctgtgagcaaaatgctaagtaatcagtttt 320
Query: 121 aaatatttcatgtataaaggtgttggttggtaaagttgtaatctatgaatatagattaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatatttcatgtataaaggtgttggttggtaaagttgtaatctatgaatatagattaca 380
Query: 181 tagaacgtagtcgttgaggtcacgagggcctaagttcaaaccagttagcttttttgtgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagaacgtagtcgttgaggtcacgagggcctaagttcaaaccagttagcttttttgtgtt 440
Query: 241 ccctactacaaattgtactg-ccagtacagagactgggaaagacttcggatgcagctcag 299
|||||||||||| | | || |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctactacaaa--gga-tggccagtacagagactgggaaagacttcggatgcagctcag 497
Query: 300 tggtagcttgcctgcttgggtgacgctcggggttctctttccagtgctgtcacgacaggg 359
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 498 tggtagcttgcctgcttgggtgacgctcggggttctctttccagtgctgtcaggacaggg 557
Query: 360 tggcagacacaggaatacattttcccctgaagtcaggaaaatttgaaatacgttctttta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tggcagacacaggaatacattttcccctgaagtcaggaaaatttgaaatacgttctttta 617
Query: 420 cccttttatttgtttgagaagaaatggaattcaaggatgtgatttgttgagaagttgtgg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 cccttttatttgtttgagaagaaatggaattcaaggatgtgatttgttgagaagttgtgg 677
Query: 480 ttgtaggcaagcagctcagggtgcctcttttcttcaccgtggtatctgcctacattgttt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ttgtaggcaagcagctcagggtgcctcttttcttcaccgtggtatctgcctacattgttt 737
Query: 540 aaaatactttgtgtgaagaatataaatgccactgagaagc 579
||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 aaaatactttgtgtgaagaatataaatgccactgagaagc 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 977
Length adjustment: 10
Effective length of query: 569
Effective length of database: 967
Effective search space: 550223
Effective search space used: 550223
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no386_m13.g1 MSMg01no386_m13.g1 CHROMAT_FILE:
MSMg01no386_m13.g1 PHD_FILE: MSMg01no386_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:40 2005
(678 letters)
>mm_chr8_112596663_112597740
Length = 1078
Score = 1183 bits (612), Expect = 0.0
Identities = 655/678 (96%), Gaps = 15/678 (2%)
Strand = Plus / Minus
Query: 1 caaggccagcctgatgtttgaataagccaatagtgtgtcgctatgctgaattccacaccc 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 caaggccagcctggtgtttgaataagccaatagtgtgtcgctatgctgaattccacaccc 1007
Query: 61 ctaagccccttaccccataataacccctagctttcgagcctcgtggccgacatctgttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 ctaagccccttaccccataataacccctagctttcgagcctcgtggccgacatctgttat 947
Query: 121 ctcctgtgtgggatgcatgtcagtccggagctccgtcattaaacgacctcatgtaattac 180
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 946 ctcctgtgt-ggatgcatgtcagtctggagctccgtcattaaacgacctcatgtaattac 888
Query: 181 atcagggcggtctattcatgattctttgggtgcacgctggattgggaattgagtgggggt 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 887 atcagggcggtctattcatgattctttgggtgcacgccggattgggaattgagtgggggt 828
Query: 241 ttcctcactattttctatcactaagatggatatactaattaccaccaaagcagagaagaa 300
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 ttcctcattaggttctatcactaagatggatatactaattaccaccaaagcagagaagaa 768
Query: 301 cagaacctcagtggacacatcgcattgcctcccaagctttccttggctcaggcgtttgaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 cagaacctcagtggacacatcgcattgcctcccaagctttccttggctcaggcgtttgaa 708
Query: 361 cagtgtggcttccatggtctagtcttcctcgtatattctaaagacttttgaacatatgct 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 707 cagtgtggcttccatggtctagtcttccttgtatattctaaagacttttgaacatatgct 648
Query: 421 acctctaagccaaatgatacagaacttacacagattatgtggaagagggcctatgcttta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 acctctaagccaaatgatacagaacttacacagattatgtggaagagggcctatgcttta 588
Query: 481 agtgctagccatggaatcattaagactcagggtcatgaaacaaaataacagactgaagaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 agtgctagccatggaatcattaagactcagggtcatgaaacaaaataacagactgaagaa 528
Query: 541 aggcagaagcaatgggtgagcgcttgcattttaaaattccacaccctgaagatgccccta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 aggcagaagcaatgggtgagcgcttgcattttaaaattccacaccctgaagatgccccta 468
Query: 601 aaggttagggacactgaattaagggcacttagttgtggcaagacagagagaaaggaagtt 660
||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 467 aaggtta--------------agggcacttagttatggcaagacagagagaaaggaagtt 422
Query: 661 acaacggtacttaaagca 678
||||||||||||||||||
Sbjct: 421 acaacggtacttaaagca 404
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space: 713424
Effective search space used: 713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
