Query= MSMg01no388_l09.b1 MSMg01no388_l09.b1 CHROMAT_FILE:
MSMg01no388_l09.b1 PHD_FILE: MSMg01no388_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:06 2005
(573 letters)
>mm_chr8_67869106_67870077
Length = 972
Score = 1048 bits (542), Expect = 0.0
Identities = 563/570 (98%), Gaps = 1/570 (0%)
Strand = Plus / Plus
Query: 4 gaattcaaaacatgcttcctacatgtacatcaaaatgtagggcttgccacccattggatc 63
|||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 204 gaattcaaaatatgctacctacatgtacatcaaaatgtagggcttgccacccactggagc 263
Query: 64 atggccaacttaaccaggatccagtccttggagaaaatggacttttcgttactagcagcc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atggccaacttaaccaggatccagtccttggagaaaatggacttttcgttactagcagcc 323
Query: 124 atcaactgccaagagttctttagctaagggtgggatgcgttgatcccctcccccagcagt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atcaactgccaagagttctttagctaagggtgggatgcgttgatcccctcccccagcagt 383
Query: 184 ctggaatgatgactggcttgatcttgcacaagcagctcttgtgaaagtaactcttggtga 243
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 384 ctggaatgatgactggcttgatcttgcccaagcagctcttgtgaaagtaactcttggtga 443
Query: 244 tttcgggttctttagtgcagtgatcctctcatgcacaggagacatggtctcaaggcactc 303
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 444 tttcgggttctttagtgcagtgatcctctcatgcacagtagacatggtctcaaggcactc 503
Query: 304 taatgtctgggtcttctcagttttatagctcctctctattgaggctccctaaatcttcag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 taatgtctgggtcttctcagttttatagctcctctctattgaggctccctaaatcttcag 563
Query: 364 ggaagtggacagaatatagattctgggattcctacataggacactgcagagaaactttcc 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 564 ggaagtggacagaatatagattctgggattcctacataggacactgcagagaaa-tttcc 622
Query: 424 taaataatgctgtattctaatctatctttcatgactcccggagaaagatgtagccattag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 taaataatgctgtattctaatctatctttcatgactcccggagaaagatgtagccattag 682
Query: 484 ccagtggattgagtagttaaacagtaaagggcaggaagtgggctgtaaatagaaatttgc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ccagtggattgagtagttaaacagtaaagggcaggaagtgggctgtaaatagaaatttgc 742
Query: 544 attttattgtaattttatgtagaaaggtcc 573
||||||||||||||||||||||||||||||
Sbjct: 743 attttattgtaattttatgtagaaaggtcc 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 972
Length adjustment: 10
Effective length of query: 563
Effective length of database: 962
Effective search space: 541606
Effective search space used: 541606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no388_l09.g1 MSMg01no388_l09.g1 CHROMAT_FILE:
MSMg01no388_l09.g1 PHD_FILE: MSMg01no388_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:06 2005
(307 letters)
>mm_chr8_68004252_68004958
Length = 707
Score = 565 bits (292), Expect = e-165
Identities = 301/304 (99%)
Strand = Plus / Minus
Query: 1 aaagttcctacaaaagaaaaacttgtggttcatgtaactaattttgtcaactcttacaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 aaagttcctacaaaagaaaaacttgtggttcatgtaactaattttgtcaactcttacaaa 393
Query: 61 gaaaacattttctatggaaccctccagtctgatgtagttaagagatattatccttatagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gaaaacattttctatggaaccctccagtctgatgtagttaagagatattatccttatagg 333
Query: 121 gctgtatttttctgaagactgtagttgcctaaggagtaagatattaaagaaattgtgtaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gctgtatttttctgaagactgtagttgcctaaggagtaagatattaaagaaattgtgtaa 273
Query: 181 aaagctagagattggcagtattcaaagagctaactaaatatcaactggaatgtccaaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaagctagagattggcagtattcaaagagctaactaaatatcaactggaatgtccaaaac 213
Query: 241 ttgtttggaaaaagaaggaggaggagaagtgggggacaggaggaagaggtggaggaggag 300
||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 212 ttgaatggaaaaagaaggaggaggaggagtgggggacaggaggaagaggtggaggaggag 153
Query: 301 gagg 304
||||
Sbjct: 152 gagg 149
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space: 208004
Effective search space used: 208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
