BAC Information

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BAC

Clone NameMSMg01-389C13
Chromosome8 (Build37)
Map Location 126,197,414 - 126,197,534
singlet/doubletsinglet
Overlap genenone
Upstream geneCbfa2t3h, C230057M02Rik, A530010L16Rik, BC021611, LOC100043225, Cdh15, Ankrd11, Spg7, Rpl13, Cpne7, Sult5a1, LOC100043251, Dpep1, Chmp1a, 4732415M23Rik, Cdk10, Spata2L, 1300018I17Rik, Zfp276, Fanca, Spire2, Tcf25, Mc1r, Tubb3, Def8, Afg3l1, Dbndd1, Gas8, Rn5s-ps1, Rhou
Downstream geneLOC100042484, LOC100042490, Rab4a, 1700054N08Rik, LOC100043296, Acta1, Nup133, Abcb10, Taf5l, AK122209, LOC100042530, LOC100042535, Galnt2, Pgbd5, Cog2, Agt, Capn9, 2310022B05Rik, Ttc13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389C13.T7 (MSMg01no389_c13.b1)MSMg01-389C13.TJ (MSMg01no389_c13.g1)
ACCAG491481AG491482
length764733
length of high quality
(start - end)
338 (182 - 519)121 (123 - 243)
definitionCHROMAT_FILE: MSMg01no389_c13.b1 PHD_FILE: MSMg01no389_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:40 2005CHROMAT_FILE: MSMg01no389_c13.g1 PHD_FILE: MSMg01no389_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTTTATAATTTGCGGGCGGTAATANGAATACTATATCGAGAGGATCCG
CGGAATTCAATCCTCTTTCACCACACGATAGGTCACAACCGTCTGTAATG
TGATCCAAATGGCCTCTTCTGGCACGAAGGTGTACATACAGTAGAGCACT
CATATACATAAAATAGATAAATAAGTAAGATATCTTTTCTAAAATAAAAG
AGTACTACTACCTGTTCTTCTAGAGGGCCCAGATTCTACTCCTAGCACCC
ACGAGGTGGCTTACAGTCTTTTGTTGCTCCGATGTCCACTTCTGGCCTCT
GCAGGCACCAGGCATCCATGGGGTGTTATAGGCATTCATACAGGCAATGC
CCACATACATTAAACTTTTAAAAAAATATATATATCTTAAATATATTTTC
TGAGACAGGGTCTCTCTATATAGTCCTGAATGTCCTTAAGTTCATTATGT
AGACTAAGTTGGCCTCAAATTCACAGAGCTCCACCCGCTTCTGCCTCTCA
CATGGTCTCAGGAGGATTGCCCATCAATTTGAGACCAGCCTTGTCTACAC
CGGGAGTTCCAAATCAGACCAGAAACTGTTTCAAGGAATACAAAAAAGCG
ATTCCCCCAAATACTGACAATCATACTTCTGCTGATGATAACTTGAGATA
GGGCCTTATTACATTTGTCCAGCTGGGTTCAGTTCATACGCCTCCGCCCC
CCCCAGGGCTGAGAGAAACCACACTCCAAACGGCCCTCCGGCCCTAACGA
GGTTATCCATGATG
CCCCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAACTTCTTCCCTGCTGAGCCACTTCCCG
GCATTTCTCATCACACAAGGGTCAGGTGGGGGCTCTTCTTCTATCTTCAC
AAGGCAGATGACCCACTTGGGTTTCTAGATGATCTACAGCACAGATGTTC
TCTTTCCAAACGTTCAAGGTGGAAATTTGATAGACACTTGGAGAATAGAG
GTGATCTTTAAAGTTTGAATCCCATCCCTGTCTTCCTCTGGTTCTTCCTG
CCCAGTGATGGGAACCAGCTAACCATTGCTTAGTTCAAGTGTCGGACAGA
GGCCACGTTCTGTCCTATATGGAAATCTGGTTCAAGTCCCCTCCCCGGGG
ACTGCTGTGTTTAGCAGAGCTCATGTTTATTTGGAGTGTGGGGAGAGCAT
GAAAGATTTGGTCTGGACCTGATGGGAACTCGATAAATGTTGTTGGATTG
CTGAAGATCTCAGAGACCAAGACATTATCGTAGACAGAAGTTGTTGACGG
ACTGACATACAAAATGTCACCTAACTGAGCAGTATTAATAGACCTGTTAC
TTGACAAATCTGAATTTTAAGCATTAACCTATATGGGCGTATACAAAGGC
CCCCCCTGTTTTATTTTTTTCCAGCCCCGAATCTACCAGGATCACCTCGG
CACCCCGCCCTTGCAAAACTCACCCCAGTAGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_c13.g1 MSMg01no389_c13.g1 CHROMAT_FILE:
MSMg01no389_c13.g1 PHD_FILE: MSMg01no389_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:40 2005
         (121 letters)



>mm_chr8_126197214_126197734
          Length = 521

 Score =  226 bits (117), Expect = 3e-64
 Identities = 120/121 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggtgggggctcttcttctatcttcacaaggcagatgacccacttgggtttctagatga 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 caggtgggggctcttcttctatcttcacaaggcaaatgacccacttgggtttctagatga 260

                                                                       
Query: 61  tctacagcacagatgttctctttccaaacgttcaaggtggaaatttgatagacacttgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctacagcacagatgttctctttccaaacgttcaaggtggaaatttgatagacacttgga 320

            
Query: 121 g 121
           |
Sbjct: 321 g 321


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 121
Length of database: 521
Length adjustment: 8
Effective length of query: 113
Effective length of database: 513
Effective search space:    57969
Effective search space used:    57969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)