BAC Information

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BAC

Clone NameMSMg01-389P05
Chromosome8 (Build37)
Map Location 69,457,143 - 69,457,417
singlet/doubletsinglet
Overlap genenone
Upstream geneMarch1, 1810029B16Rik, Tktl2, Npy5r, Npy1r, BC053440
Downstream geneLOC665453, Nat1, Nat2, LOC100041265, Nat3, Psd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389P05.T7 (MSMg01no389_p05.b1)MSMg01-389P05.TJ (MSMg01no389_p05.g1)
ACCAG492082AG492083
length780760
length of high quality
(start - end)
61 (85 - 145)518 (76 - 593)
definitionCHROMAT_FILE: MSMg01no389_p05.b1 PHD_FILE: MSMg01no389_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:42 2005CHROMAT_FILE: MSMg01no389_p05.g1 PHD_FILE: MSMg01no389_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCTCXXXXXXXXXXXXXXXXXXAGAATACTATTCCGCACCTAGCGNG
GNAATATCAATTTCTAGAACATCTTGNGNGCCGNTGGAGTTCTTTTCAGA
AAGTCCTTGTCGGTGCTGACGCTTGACCTGTTTCTCCTCTGTTCCCTCTA
GTTTCATAGTTTCCGATCTTACGGTAAGGTCTTTCATCCATCTGGAGCTG
AGTATCATGGCAAAGGAGATAACATTCAGCTTCATTCTTCTGCCTGGAAA
CCCAGCTTTCCCTATATTGTTTGTTATAAAGTTCTCTTTTTTGTTATGTG
TGCCCTTTGGATGTCTTTTTTTATCTGCAAGCGTACCCTGCTGCATGGTT
TGGATGTGTTTCCCTTACTCCATCCCATTGGCCCTGCCCTTTGCTACCAC
GTCTATCCTGCTTTTCCTGCCACCACTCTGCCATCACCTCCTCCCATCCC
CTATCCCCCTGCACTTCCCCTCCCCCCTGCCCCCCCCTGCTCCTGTATCG
TCCTGCCCCCTTCATTCCTTCCCCCTATTGCCCTTTCCTTTTCCCCTCTA
TCTATTCTTTTCCATTCTTGTTTCCGTCACTTTTCCCCCCATCTCCTTTT
CGCCTTCCCTTTTCTTTCTCCATTTCTCCCTTACCCCCCTGTCTTCCTTT
TCCTTCCCCTTTTTTCCCTCCCTTCCCTCCTCTTTGCCTTCCCTTCTCCT
CCCCCTCCCATCTTTTTCTCCCCATCTCTCTCCTTCCTTTTCTCTCCCCT
CCCGTTCCTGCCTTCCCCCTTTTTCTCTTN
CCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTCATGAATGTTCTTCCTGAAGCTC
TATTTTACTGTGGCTTTCAGGTGGTCACACAAACTAGCTTGGGCTCTTAC
TTTTCCTGAAAATGGACTGTTGTTTTTAACCAATAGACAAGTTAATCCAC
TGGGTAAATTACCTTGATGATCTTAAATAATGTTATTTCCAATGTATTCT
CATATAAAAGTCAACATGTATTTATTAACACTGTCATATGCATCAAATAT
TAAAAATTAAAAAGAAAATATAGTTTGTCTTCCTTGCTCTTCTTTTTTTT
TTTTTAAAGATTTATTTATTTATTGTATGTAAGTACACTGTAGCTGTCTT
CAGACACTCCAGAAGAGGGAGTCAGATCTCATTACAGATGGTTGTTAGCC
ACCATGTGGTTGCTGGGATTTGAACTCCAGACCTTTGGAAGAGCAGTCGG
GTGCTCTTACCCACTGAGCCATCTCACCAGCCCTCTTTTTTTTATATACT
GTTTTTTATTAGATATTTTCTTTATTTACATTTCAAATGTTATCCTCTTT
CCTGGTTTCCCCTCTGAAAATTCCCAACCCCTTTCTTCTTCCCCCTCCCC
TTGGCCCACCAACCCACATACTCCCTGCTTCCTGGCACTGGTATTTTCCC
TAAAACCCTGCCCAAAAACCTTCCCCGGGGCCAAAGTTCTCCCCCCTCCC
GGTTGAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_p05.g1 MSMg01no389_p05.g1 CHROMAT_FILE:
MSMg01no389_p05.g1 PHD_FILE: MSMg01no389_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:42 2005
         (518 letters)



>mm_chr8_69456999_69457916
          Length = 918

 Score =  516 bits (267), Expect = e-150
 Identities = 273/275 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcatgaatgttcttcctgaagctctattttactgtggctttcaggtggtcacacaaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ttcatgaatgttcttcctgaagctctattttactgtggctttcaggtggtcacacaaact 360

                                                                       
Query: 61  agcttgggctcttacttttcctgaaaatggactgttgtttttaaccaatagacaagttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 agcttgggctcttacttttcctgaaaatggactgttgtttttaaccaatagacaagttaa 300

                                                                       
Query: 121 tccactgggtaaattaccttgatgatcttaaataatgttatttccaatgtattctcatat 180
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 299 tccactgggtaaattaccttgatgatctcaaataatgttatttccaatgtattctcattt 240

                                                                       
Query: 181 aaaagtcaacatgtatttattaacactgtcatatgcatcaaatattaaaaattaaaaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 aaaagtcaacatgtatttattaacactgtcatatgcatcaaatattaaaaattaaaaaga 180

                                              
Query: 241 aaatatagtttgtcttccttgctcttctttttttt 275
           |||||||||||||||||||||||||||||||||||
Sbjct: 179 aaatatagtttgtcttccttgctcttctttttttt 145


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)