BAC Information

Click to search

BAC

Clone NameMSMg01-390A16
Chromosome8 (Build37)
Map Location 88,116,131 - 88,116,522
singlet/doubletsinglet
Overlap genenone
Upstream geneCacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik, Gpt2, Dnaja2
Downstream geneNeto2, Itfg1, LOC100040798, Phkb, LOC671665, LOC100040165, Abcc12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390A16.T7 (MSMg01no390_a16.b1)MSMg01-390A16.TJ (MSMg01no390_a16.g1)
ACCAG492151AG492152
length734733
length of high quality
(start - end)
389 (81 - 469)505 (82 - 586)
definitionCHROMAT_FILE: MSMg01no390_a16.b1 PHD_FILE: MSMg01no390_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:49 2005CHROMAT_FILE: MSMg01no390_a16.g1 PHD_FILE: MSMg01no390_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCTGATCGTCTGTTGTCTCAGATGCTCCTTCGGAGGGCAGA
ATGACTCAGGGAAGTCGCCTCTGTAAGGAACCCGCTTGGGAGCCGGCAGT
CCAGGAACTGTGCATATGGAGGAACAAGGTCTCAAAGCAGAAAACTGGGT
GCTGACGGCAAGCAGCGCTGCTGGAAAGCTCCATTAAGTATCAGGGTAGC
AAACACGACACAATCAATTTCATGGGCGCAGTACAACACAGAACCCGCCC
CGCCATGCTGCCCCAGAGCATCTGGCCTTGAGGCTACCTTCCAGACCGGC
CCACGCCTCATTTCCAACTCAGCCTGAGTTAAGAAAACGGACCGGAAATT
GAAGCAGTTCAGCACAGCAGAGCAAGCCTGAGTTGCCTCGCTTGTGGTCC
TTTCTGGGTTGTGATTGCAAACAGTCTAGTACACGGGTCAGCGAGGTGGC
TCAGTGGGTAAAGGTACCACCAAGCCTCACAACTGAGGATACCGGCAGGT
TTGAAGAGAACCCCTTGACAGCGCTTTTAGGCCAGCCCGGTTTACAAAGT
GAGTTCCACAACAGCCCGGACTATACCGAGAAACCCCTGCCCTGACAACC
CCCCCCACCCCCCTCCTCTCCCCAACCCCCTCTCCGCCTGCGTAATCCCC
GCCGACACGCGCCCCCCCCTCCCCTTGACAGGCN
NNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGATGTGGGCATCCACTC
CTGGCTCACTTGCATTTCTTTATATCAGGAACAATCTTTATAAAAGAGAA
GGGGAAACTTACACTGACGTAATATAAATATAACTTAATACGTAGGGATA
CATTTACTCAAGGAAGTGAAAGATCTGTATCCTGAAAGCTAGAAAACATT
GGAGTTGAAAAAGTCACAAATAAGTAGAAAGATATTTCATGCTATGAACT
TGAATAGATTTGAACGTACTGTTCAAATGTATCTAGTATGTAAAATGATA
AACACAACTTCTATCAAAATCCCAATGATGTCTTGCACAGAAACTGAAAA
TAGTATTAACATGGAGGCAGAGAAGACTCCTCCTAAAGCCAAGACAATTC
TGAAACAAATAGGAAGGTACCACATGTTTTGTTTTTATTTTATGTGTATG
GATGTTTTGCCTGCATGCAGGTCTGTACATCATTTGTGTACCTGGTACTC
CCAGAGGCTGGAAGTGGGCATCAGATCCCCTGCAGCTGGAGCTACAGATC
ATTGTGAACTGCTATGTGGCTGCTGGAAATTGAATCAGGTGCTTTGGAAG
AGCAGCAGGTTTTCTTAATCACCGAGTCACCATTCCAACCTGGAGATTCA
TGTTTCCTGATTTCCAAGTAAATACCAAGGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_a16.b1 MSMg01no390_a16.b1 CHROMAT_FILE:
MSMg01no390_a16.b1 PHD_FILE: MSMg01no390_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:49 2005
         (389 letters)



>mm_chr8_88115931_88116722
          Length = 792

 Score =  663 bits (343), Expect = 0.0
 Identities = 379/393 (96%), Gaps = 5/393 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgctccttcggagggcagaatgactcagggaagtcgcctctgtaaggaacccgcttggg 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 atgctccttcggtgggcagaatgactcagggaagtcgcctctgtaaggaacccgcttggg 533

                                                                       
Query: 61  agccggcagtccaggaactgtgcatatggaggaacaaggtctcaaagcagaaaactgggt 120
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 532 agctggcagtccaggaactgtgcatatggaggaacaaggtctcaaagcagaaaactggat 473

                                                                       
Query: 121 gctgacggcaagcagcgctgctggaaagctccattaagtatcagggtagcaaacacgac- 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 472 gctgacggcaagcagcgctgctggaaagctccattaagtatcagggtagcaaacacgaca 413

                                                                       
Query: 180 ---acaatcaatttcatgggcgcagtacaacacagaacccgccccgccatgctgccccag 236
              |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 412 cttacaatcaatttcatgggcgcagtacaacacagaaccc-acccgccatgctgccccag 354

                                                                       
Query: 237 agcatctggccttgaggctaccttccagaccggcccacgcctcatttccaactcagcctg 296
           ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 353 agcatctggccttgaggctaccttccagacccgcccacgcctcatttctaactcagcctg 294

                                                                       
Query: 297 agttaagaaaacggaccggaaattgaagcagttcagcacagcagagcaagcctgagttgc 356
           ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 293 agttaagaaaatggaccggaaattgaagcagtacagcacagcagagcaagcctgagttgc 234

                                            
Query: 357 ctcgcttgtggtcctttctgggttgtgattgca 389
           ||||||||||||||||||||||||| |||||||
Sbjct: 233 ctcgcttgtggtcctttctgggttgggattgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 792
Length adjustment: 9
Effective length of query: 380
Effective length of database: 783
Effective search space:   297540
Effective search space used:   297540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)