BAC Information

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BAC

Clone NameMSMg01-390C08
Chromosome8 (Build37)
Map Location 123,010,186 - 123,010,651
singlet/doubletsinglet
Overlap genenone
Upstream geneGm587, Mbtps1, Hsdl1, Lrrc50, Taf1c, EG628061, 4930403J07Rik, Kcng4, Wfdc1, Atp2c2, 4632415K11Rik, Cotl1, BC025816, Usp10, Crispld2, Zdhhc7, 6430548M08Rik, 1700120B06Rik
Downstream geneGse1, 4833427B12Rik, LOC668301, 1190005I06Rik, Cox4nb, Cox4i1, Irf8, LOC100042333, Foxf1a, Mthfsd, Foxc2, Foxl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390C08.T7 (MSMg01no390_c08.b1)MSMg01-390C08.TJ (MSMg01no390_c08.g1)
ACCAG492231AG492232
length753750
length of high quality
(start - end)
433 (73 - 505)466 (81 - 546)
definitionCHROMAT_FILE: MSMg01no390_c08.b1 PHD_FILE: MSMg01no390_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:58 2005CHROMAT_FILE: MSMg01no390_c08.g1 PHD_FILE: MSMg01no390_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAACCCGCG
GAATTCACTCTGTATTCCCCGCTATCCTTGAACTCATTTTGTAGCCTGGG
ATAGCCTTGGACTCACTCTGTATGTTGTCACGGACTCTGGTGGAGTCAGC
TTGTGAGGCAGAAATGCCAAAAAGCTGCTCATGAGAAATGAATTTCTAGT
ACTCTCCTCCTGGATATTCTGGCGAAAGCCAACTCTCCAGTTTGGATCGG
TTTGTCAGGCGAAAAACCTGGAAGCTGTTTCACGAGGATAAGAGTCCAGG
GAAATTTTCCTCCCAGAGTTATGGTATCTCTTACCCTAACCCATTATATT
CAAATTTCCACCACATTAATCTAGTGTATAGATTCACGTGCACTCTATTA
AGCATCACCTTATAGTAAATGCCTTTTAAGATTGTATTCTAACATAGCTA
AAGCCTTTTCCCAGTGTTCTTAGACTCCAGATAGCAGCAAGGAGCTTAAC
CCATTCAGTAAACAATTAAGCACCTTGCCATTTTACTCAGCTGTTTACAG
ATAGAGACTACAAGTCTCACTGAGATAGAAATCTTTTACTACAGGCTACT
TCCCTGTCCAGTATAAGTTGATATACCTACCCGACAAGGGCGAACCTCTC
CCGACCAGATAAGTTTTATTACACCTAACAATTTAGAGCTCTGCTGATAC
CGCTTACCCCTAACGCCCTGCCAGAACTCACACCCCCCCGACGCTTTTAA
CCT
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGTCACTCTCAGATTACAGG
CCTCTAGGGGAGAGCTCTAGAGGGCACTTTGAGGAAGGTGGGGGCCAAGC
CTTCTGATCCTTGCTGCGCCCCCCTCTGCAGCAGACCAGACGAGCGCGAT
CCCGTGGAGGGCGCCTGGGCCCCAAGTAGCAGGAAGGCGCCGCTGCTGGC
CTCTAGCCGCTCTGCTACGCATGACCCCAGAGGTCGCGTCAAGCCCTAGG
CTGCCGCCCTTTGTTTCCGGGGCTGCCTGTTTTGCGAGGACACACAGGCC
GGACTCGGGGGTCTAGGGTCATAGCATCCATCACCTGCCCGCACTCTTGG
GCTAGGTGAAGGAGAAGGGACCAGGAGCTGCTCACACACATACCCCACTC
CCAGCCCCCGCCCAACTTCCCGACCCCTCACAAGCTCTAGCTGTACTTCA
GGGAAACGAATAAAAACTATTTTTAAAAGACCCTAAACTATCAGTTTGTG
CTGTCACTCTTTTATTGGCTTTTTAATTCCCCGGGACTACCGGAACCATA
GTAGTAATTAATACCATACCTTCCCTCCCTGTATATGCTATCGGCCGGAG
CCCTTAAAACTAATTTTGCTACCTGTCTTTACCCCATTATCATCCCCGGC
ATTAACCCCGTTCCTATGGCCCAATTCTCGGACGGGCTCCTCAATGAAGC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_c08.g1 MSMg01no390_c08.g1 CHROMAT_FILE:
MSMg01no390_c08.g1 PHD_FILE: MSMg01no390_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:58 2005
         (466 letters)



>mm_chr8_123009986_123010851
          Length = 866

 Score =  847 bits (438), Expect = 0.0
 Identities = 459/470 (97%), Gaps = 8/470 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtcactctcagattacaggcctctaggggagagctctagagggcactttgaggaaggtg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 666 ggtcactctcagattacaggcctctaggggagagctctagagggcactttgagggaggtg 607

                                                                       
Query: 61  ggggccaagccttctgatccttgctgcgcccccctctgcagcagaccagacgagcgcgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ggggccaagccttctgatccttgctgcgcccccctctgcagcagaccagacgagcgcgat 547

                                                                       
Query: 121 cccgtggagggcgcctgggccccaagtagcaggaaggcgccgctgctggcctctagccgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cccgtggagggcgcctgggccccaagtagcaggaaggcgccgctgctggcctctagccgc 487

                                                                       
Query: 181 tctgctacgcatgaccccagaggtcgcgtcaagccctaggctgccgccctttgtttccgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tctgctacgcatgaccccagaggtcgcgtcaagccctaggctgccgccctttgtttccgg 427

                                                                       
Query: 241 ggctgcct----gttttgcgaggacacacaggccggactcgggggtctagggtcatagca 296
           ||||||||    |    |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ggctgcctgcgag----gcgaggacacacaggccggactcgggggtctagggtcatagca 371

                                                                       
Query: 297 tccatcacctgcccgcactcttgggctaggtgaaggagaagggaccaggagctgctcaca 356
           ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 370 tccatcacctgcccgcactcttgggctaggtgaaggagaagggaccaggcgccgctcaca 311

                                                                       
Query: 357 cacataccccactcccagcccccgcccaacttcccgacccctcacaagctctagctgtac 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 cacataccccactcccagcccccgcccaacttcccgacccctcacaagctctagctgtac 251

                                                             
Query: 417 ttcagggaaacgaataaaaactatttttaaaagaccctaaactatcagtt 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ttcagggaaacgaataaaaactatttttaaaagaccctaaactatcagtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)