Query= MSMg01no390_m23.b1 MSMg01no390_m23.b1 CHROMAT_FILE:
MSMg01no390_m23.b1 PHD_FILE: MSMg01no390_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:50 2005
(517 letters)
>mm_chr8_55480862_55481778
Length = 917
Score = 888 bits (459), Expect = 0.0
Identities = 498/511 (97%), Gaps = 1/511 (0%)
Strand = Plus / Minus
Query: 1 attaatatatttaattgtgtttacga-ggggggtacagtgtgggtcacatgcataccagt 59
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 907 attaatatatttaattgtgtttatgagggggggtacagtgtgggtcacatgcataccagt 848
Query: 60 gcacttgtgtagaggtcaggggacatctagcttgaagtgattgtctccatagaccatcag 119
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 847 gcacttgtgtggaggtcaggggacatctagcttgaagtgattctctccatagaccatgag 788
Query: 120 agccctagctatggtttgaaagcatatagtcataggtagtattcaatatctttgcttgct 179
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 787 agccctagctatggtttgaaagcatatagtcataggtagtagtcaatatctttgcttgcc 728
Query: 180 gagccatattggcagtcttcattcaataattctttaatttatttctactggtgacaagtt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 gagccatattggcagtcttcattcaataattctttaatttatttctactggtgacaagtt 668
Query: 240 gttttaaaaattagtttgaaagtatatacacattttgttcttattctggaaagctctagt 299
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 667 gttttaaaaatttgtttgaaagtatatacacattttgttcttattctggaaagttctagt 608
Query: 300 cattgataaaacttgatactgtcatttaattcagctttgcctcctctagcgtttatttca 359
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 607 cattgataaaacttgatactgtcatttaattcagctttgcctcctctagcatttatttca 548
Query: 360 gcttgtgcagtcagctctcaactcttagctctctaaaggtaaatgcttttatttctctta 419
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 547 gcttgtgcagtcagctctcaactcttacctctctaaaggtaaatgcttttatttctctta 488
Query: 420 ttgccctgaatattttatatttttccaccacatatgttagtgcaatactcctacttataa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ttgccctgaatattttatatttttccaccacatatgttagtgcaatactcctacttataa 428
Query: 480 tctgtatgcgcttttatggatacagatagat 510
|||||||| |||||||||||||||| |||||
Sbjct: 427 tctgtatgtgcttttatggatacaggtagat 397
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no390_m23.g1 MSMg01no390_m23.g1 CHROMAT_FILE:
MSMg01no390_m23.g1 PHD_FILE: MSMg01no390_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:50 2005
(194 letters)
>mm_chr8_55275738_55276328
Length = 591
Score = 337 bits (174), Expect = 4e-97
Identities = 188/194 (96%), Gaps = 3/194 (1%)
Strand = Plus / Plus
Query: 1 taggcaaaagaggcacaggcaaataaaaaatgtggcaaacatccagcttcttcttcaact 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 taggcaaaagaggcacaggcaaataaaaaatgtggcaaatatccagcttcttcttcaact 260
Query: 61 tctagaccaaaccacaaaggcttagcagctgaggacatatctgaagagttcttctccccg 120
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 261 tctagaccaaaccacaaaggcttagcagctgaggacatatctgaagaattct---ccccg 317
Query: 121 tcagtaaacctcacacctgcttctgtgattgctcttgtccagcatggccaggtaagttta 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 318 tcagtaaacctcacacctgcttctgtgattgctcttgtccagcatggtcaggtaagttta 377
Query: 181 aagtcagatcaggg 194
||||||||||||||
Sbjct: 378 aagtcagatcaggg 391
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 591
Length adjustment: 8
Effective length of query: 186
Effective length of database: 583
Effective search space: 108438
Effective search space used: 108438
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
