BAC Information

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BAC

Clone NameMSMg01-391H20
Chromosome8 (Build37)
Map Location 118,065,745 - 118,066,245
singlet/doubletsinglet
Overlap genenone
Upstream geneWwox
Downstream geneMaf, LOC384868, LOC668233, Dynlrb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391H20.T7 (MSMg01no391_h20.b1)MSMg01-391H20.TJ (MSMg01no391_h20.g1)
ACCAG493250AG493251
length766779
length of high quality
(start - end)
509 (60 - 568)446 (72 - 517)
definitionCHROMAT_FILE: MSMg01no391_h20.b1 PHD_FILE: MSMg01no391_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:43 2005CHROMAT_FILE: MSMg01no391_h20.g1 PHD_FILE: MSMg01no391_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCCGCTAAACGACTCCTATATCCAGAGGATCCGCGGAATTCAAGAGATA
TCATTTACAAATGTAAGTGTAGGGGACCTAACCTGGTCCACAGGCTGCAG
TTTACCAGCCCCAACAGATGGTTCCCCATACCATTCATGATCCAGAAAAT
TCCACGTATTGAACATTCAATTCCCTATGTTTGAAGAATTCAGGCAAACT
AGACACATATAATATGTCATCCATAAACATTAGTAGAAAAAAAAAACGAA
CGAATGATTTTCAAATCATATTCACCCAAAGGTTAAGCAAGCCCAAACAG
GATGATACTTGAGTGCTACTAGCATCCATTAGGCCCTGCCTGTATGCTAG
ACATGGCCCAACCAAGTGCTTTCTTCTAAATTCAGAGGATTACACAGAAC
ATTGCATCCACAACTGAAAGAAGCCAGAACAGAGCTCATAAAATCTGCGT
CATCCACTTAAGGTCTCAAAATTCAAAATGGCAGAGGAGGGAATCAGATC
TGTGCTCCTAGCCCAATACTTAAGACTCCCCCCTGCGATACACATGCACA
CACACACACACACACACACACACCCANATACCCCTGCCTAACACTTAAAA
AGATTTCTGCGCTTAGCAAAACCATGAACATTCTTCGCCGATTGTTATAC
CCTTAAAGTTCCAAAAAAGCCGGAATAATTAAAGATCACGCCCCCACGCC
ACCCCTTACCCCCCCCTGCACCTTTGAAAAAATCTACCCCCCTCCCTTTT
CCCTGATACCCTCCCC
ATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGGCTTTGAACTC
ACTGAGGTCCACCTGCTTCTGCCTCCTGAGTGCTGGCATGAGGAGTGGCC
ATAACCTTTTATTTACTTTATATTTATTTATATTATCCCCCTTATATTTT
GAGGAAGGTCATTTCTCTGAACCTGGAGTTCACCAATTCAGCTAATCTGG
ATGCCGGAGAACCACAGAAATCCTCCTGTTTCTGCCTCTCTGGTGCTGGG
ATTTAACAGCACTGTCCTATTCAGTTTTTTTTTTTTTTGGATAGGTTCTG
GGGAATTGAACCCAGGTCCTCATGCTCACATAGCAAGCATGTTAATAACT
AAGCCATCACCTCTGCCCCACACAGCTCCTTCTTATTATGAGCTTTAAAA
GAAATATACTCCATCCACAGGGCCGTTGACTCTTAGCTCTCCAGGGACAA
CCTAGTAAGTTTTACAGCCATCCAGAGCGCGCAAGAGGACATTTGTAATT
AAATTCTTTAGTGCTCTACTTGACCCCATTTCAACTGGGCCATAAGTTTT
GGGCGGAAAATACTCCTCTCTTGTTCCCAATTTTTCCCACCGCTTACGAC
TTGGTTTAAAACCCGGCCGCTCCTATTACCCCAATGGGCGCAACCACTTT
GCCTATCTGGTACTGACTTTTCTGCCCCGTCCCTGTAAACGTCTACTCCC
GTTCCGTTCTTTCTCCCCTCCCCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_h20.b1 MSMg01no391_h20.b1 CHROMAT_FILE:
MSMg01no391_h20.b1 PHD_FILE: MSMg01no391_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:43 2005
         (509 letters)



>mm_chr8_118065566_118066474
          Length = 909

 Score =  917 bits (474), Expect = 0.0
 Identities = 495/502 (98%), Gaps = 2/502 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgtaagtgtaggggacctaacctggtccacaggctgcagtttaccagccccaacagat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 680 aatgtaagtgtaggggacctaacctggtccacaggctgcagtttaccagctccaacagat 621

                                                                       
Query: 61  ggttccccataccattcatgatccagaaaattccacgtattgaacattcaattccctatg 120
           |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 620 ggttccccataccattcatgatccagaaaattacacgtattgaacatccaattccctatg 561

                                                                       
Query: 121 tttgaagaattcaggcaaactagacacatataatatgtcatccataaacattagtagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tttgaagaattcaggcaaactagacacatataatatgtcatccataaacattagtagaaa 501

                                                                       
Query: 181 aaaaaaacgaacgaatgattttcaaatcatattcacccaaaggttaagcaagcccaaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaaaaaacgaacgaatgattttcaaatcatattcacccaaaggttaagcaagcccaaaca 441

                                                                       
Query: 241 ggatgatact-tgagtgctactagcatccattaggccctgcctgtatgctagacatggcc 299
           |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggatgata-tatgagtgctactagcatccattaggccctgcctgtatgctagacatggcc 382

                                                                       
Query: 300 caaccaagtgctttcttctaaattcagaggattacacagaacattgcatccacaactgaa 359
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 caaccaagtgctttcttctaaattcagaggattacacagaacattggatccacaactgaa 322

                                                                       
Query: 360 agaagccagaacagagctcataaaatctgcgtcatccacttaaggtctcaaaattcaaaa 419
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 agaagccagaacagagctcataaaatctgcgtcatccacgtaaggtctcaaaattcaaaa 262

                                                                       
Query: 420 tggcagaggagggaatcagatctgtgctcctagcccaatacttaagactcccccctgcga 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggcagaggagggaatcagatctgtgctcctagcccaatacttaagactcccccctgcga 202

                                 
Query: 480 tacacatgcacacacacacaca 501
           ||||||||||||||||||||||
Sbjct: 201 tacacatgcacacacacacaca 180


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)