BAC Information

Click to search

BAC

Clone NameMSMg01-391M03
Chromosome8 (Build37)
Map Location 119,834,181 - 120,001,181
singlet/doubletdoublet
Overlap gene4933407C03Rik
Upstream geneLOC384868, LOC668233, Dynlrb2, Cdyl2, LOC100043053, 2310061C15Rik, 2610510J17Rik, BC060631, 1700030J22Rik, Gcsh, Pkd1l2, Bcmo1, Gan
Downstream genePlcg2, 4632417N05Rik, Hsd17b2, Mphosph6, Cdh13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391M03.T7 (MSMg01no391_m03.b1)MSMg01-391M03.TJ (MSMg01no391_m03.g1)
ACCAG493455AG493456
length754809
length of high quality
(start - end)
351 (56 - 406)159 (89 - 247)
definitionCHROMAT_FILE: MSMg01no391_m03.b1 PHD_FILE: MSMg01no391_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:05 2005CHROMAT_FILE: MSMg01no391_m03.g1 PHD_FILE: MSMg01no391_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,834,181 - 119,834,531)(120,001,025 - 120,001,181)
sequence
CGGGCGCTAAACGAATCACTATAGTTCCACAATCCGCGGAATTCCCAAGT
GCTTTATTTCTGGCCCCCTTTTTACTCTGCTTCCGAAATGGAGACTTTTA
TGACAAGGTATTGCTTTTTAGGAAGGGCATTCTTCAAGGAGAAGGAGTGG
TACCAGTCCCCACGGAGGGCTTATGGGTAGTGATGCTCACACTAATCTCC
CAATGTCATCCTCAGCACATGTCACCCGCCCTGTAGTGGGCTTTCGCTAG
CTCTTCTCCATAGCTGGTCAGATGGGCAAAGAGAAGGTTTTGCACAGGGC
AGTCTCCTGGAGTTCTTCTTCCTCCTGCCACTCCCCTTCCCCTCCTCAAG
GAGTGATGGTGATGGTGGTTTGTACCATTCAGGTAGGGTACCCTTGGCTG
TGGGCATGACCCGGGCTCTTTGACTTGGGCTCTCCACAAAGAGGGTCCTT
TGTCCTTTCTGTATTGCCCTGCCTCTGACACTCTAGAGTTTAGGACCTTT
CACTTGAACAAAAACCCCGTCCGTCTTACCTGTGCCTGGGAGCTGGTCGC
TGTTGACCCAGTCATGCTCCGGGGTCCTCCCTCTCCGGCCCTTCTTTCTT
CCTTCTTTTTTCCCTCTCACCATCCCCTCTCCTCACCCGCAACCCCCCTC
TTTCTGTCCCCCCGCACCCCCCCCATTCCCCCCCCCGCGGCCTACAGCCC
CCCCCCGTGTTCCCCCGCCCTTCGAATCCCCTCACCCCCCGTCCCCTTAT
CCCG
TCCCCCCGATGATATGGGAGGCCTGGNGGNCGCCTGGTTCACAACCTTAG
GTGAACTATAGAAGTAACACAGAAATCCACGTTAGGGTGCTGCCTGCTTT
CAGAACCCTTTGGAAAATTCTGGAGACCCCCAGAGAACGTTCCAGAAATG
GAGAATTCTCCCGAGCTCTGCCCCAAGGGAAAGCTCTAGCCTGAAGGCCT
GAAACTCAGTTCTGCCTCACTACCCTGTCAACTGTGTGACTCTGGCCCTC
TCTGTGTGACTGCCCCCCTCTGTGTGACACACACACACACACATATATTT
GCCTTTCTCTTTTTTTCTTTCATTATTAGACCGCGCNCCACCGCATCACC
CCGCCCATCCTTTCTCTCCCTCTGTCCACTAGGCCGGCCCTCCCCCTCTT
TTTCCCGTTTGCCCTCCCCCCCCCCCACTCCCTCCATTTTCTGTCCCCCT
CCTTCCTCCCTCCCCCTTCCCCCCCCCCCCTTTTTTCTTCCCTCGTCCCC
CCTTCCATCCGCCCTCATCCCCCATTCTCCCCTTTTTCCCCCCCTCCCCT
TTTCCCCCTCCCCCTCCCCCCTACTTCTTTTCTTTCCCTTCCTTCCATCT
TCCCCCCTCCTTCATTCCTCCTTTCTCCCTCCCCCCTTCCCTTTCTTCCC
CTCCTCCCCCCCCCCCCTCCCCTCTTACTCTCCCCTACCATCTTTTCAGT
CCCTCCTCTCCTTCCTCTCTTCCTTTTCCCCCCCTTCCATCCAGATCGTC
CCTTCTGCCCCCCCCCCTTTCCCCCCCTTCCCCTTCCCCTTCTCCGCCTC
TCTTGCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_m03.b1 MSMg01no391_m03.b1 CHROMAT_FILE:
MSMg01no391_m03.b1 PHD_FILE: MSMg01no391_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:05 2005
         (351 letters)



>mm_chr8_119833981_119834731
          Length = 751

 Score =  679 bits (351), Expect = 0.0
 Identities = 351/351 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttctggccccctttttactctgcttccgaaatggagacttttatgacaaggtattgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttctggccccctttttactctgcttccgaaatggagacttttatgacaaggtattgct 260

                                                                       
Query: 61  ttttaggaagggcattcttcaaggagaaggagtggtaccagtccccacggagggcttatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttaggaagggcattcttcaaggagaaggagtggtaccagtccccacggagggcttatg 320

                                                                       
Query: 121 ggtagtgatgctcacactaatctcccaatgtcatcctcagcacatgtcacccgccctgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtagtgatgctcacactaatctcccaatgtcatcctcagcacatgtcacccgccctgta 380

                                                                       
Query: 181 gtgggctttcgctagctcttctccatagctggtcagatgggcaaagagaaggttttgcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgggctttcgctagctcttctccatagctggtcagatgggcaaagagaaggttttgcac 440

                                                                       
Query: 241 agggcagtctcctggagttcttcttcctcctgccactccccttcccctcctcaaggagtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agggcagtctcctggagttcttcttcctcctgccactccccttcccctcctcaaggagtg 500

                                                              
Query: 301 atggtgatggtggtttgtaccattcaggtagggtacccttggctgtgggca 351
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atggtgatggtggtttgtaccattcaggtagggtacccttggctgtgggca 551


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 751
Length adjustment: 9
Effective length of query: 342
Effective length of database: 742
Effective search space:   253764
Effective search space used:   253764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no391_m03.g1 MSMg01no391_m03.g1 CHROMAT_FILE:
MSMg01no391_m03.g1 PHD_FILE: MSMg01no391_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:05 2005
         (159 letters)



>mm_chr8_120000825_120001383
          Length = 559

 Score =  304 bits (157), Expect = 2e-87
 Identities = 157/157 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctgcctgctttcagaaccctttggaaaattctggagacccccagagaacgttccagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gctgcctgctttcagaaccctttggaaaattctggagacccccagagaacgttccagaaa 298

                                                                       
Query: 61  tggagaattctcccgagctctgccccaagggaaagctctagcctgaaggcctgaaactca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tggagaattctcccgagctctgccccaagggaaagctctagcctgaaggcctgaaactca 238

                                                
Query: 121 gttctgcctcactaccctgtcaactgtgtgactctgg 157
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 gttctgcctcactaccctgtcaactgtgtgactctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 559
Length adjustment: 8
Effective length of query: 151
Effective length of database: 551
Effective search space:    83201
Effective search space used:    83201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)