BAC Information

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BAC

Clone NameMSMg01-391P22
Chromosome8 (Build37)
Map Location 127,943,830 - 127,988,634
singlet/doubletdoublet
Overlap geneSipa1l2
Upstream genePgbd5, Cog2, Agt, Capn9, 2310022B05Rik, Ttc13, Arv1, 2310031A18Rik, LOC668444, Trim67, 2810004N23Rik, Gnpat, Exoc8, Gm505, Egln1, Tsnax, Disc1
Downstream gene4933403G14Rik, 2310079N02Rik, E330039K12Rik, BC021891, Kcnk1, Slc35f3, LOC668434, 1810063B05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391P22.T7 (MSMg01no391_p22.b1)MSMg01-391P22.TJ (MSMg01no391_p22.g1)
ACCAG493635AG493636
length779783
length of high quality
(start - end)		377 (62 - 438)398 (73 - 470)
definitionCHROMAT_FILE: MSMg01no391_p22.b1 PHD_FILE: MSMg01no391_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:23 2005CHROMAT_FILE: MSMg01no391_p22.g1 PHD_FILE: MSMg01no391_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,988,258 - 127,988,634)(127,943,830 - 127,944,227)
sequence
GCGGCGCTAAACGACTCACTATAGTTTGAGGATCCGCGGAATTCAAGTGC
TTTTGAGCCCTGTTAGTGACAGGAAGTGGAGGGACTGGCAGAAAACGTGC
AGAGCTCACAGCTTCTCCAGCCAGGCAGCCTGCCACATGAGCCAGGGTAA
AACCCAGCTTTGGTTCTGTTGTTCTTTGTCAAGGGCAACCATGGTGAACT
TTGGATTCAGATACCTTCCAGGTCACTTGAAGGGACAGAGGGGTGGCTGA
GGATAGAGCCAAGGGGGAGAGGGGCTTGCTTAGATATGTGCAGGTGGTCC
CCAGTGGGATCCCATCTGTGGTATCCAGGGAGAAAGATCAAACCTGCCTA
ACAGCTTCCCTCCCCTCAGATAGTAACAAGAGGCTGCGAGACTGTGGAAA
TGACCCTGAGACGAAACGGGCTGGGTCAGCTTGGCTTCCATGTGAACTTT
GAAGGAATTGTTGCCGATGTGCAACCCTTTTGGCTTTGCCCCGCAACGCC
AGGCCTCCCCCCAGGGAGCCCGCTTCGGGGACAACCCGCCCCGCTGGTTG
GCCCCCCCCCGCCCCCCCCCCCAAAATGATTGATCTACCGCCCCCCCCCT
TTCACCCGCCCCCTACACTTTTTTCCCCCCCCCCATCATGTTTTTTCCCC
CCCCCAACCCCCTCCATTTGTTTTTCCCCCCCCCCCCCCCCCACCCCCTT
TCTTTCTTTCCCACCCCCCCCCCCCCCCTTCTTCCACTCCCTTTTTTTAC
CCTTCCCCCTTTTCACTCTTCCCCCCCCC

ATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTCACCACTAATGGACAACTCTAAAGCC
CGGTTCCTCTTCTCTCTCCAACCCACAGCGCACCACACTTCAGCACTGAT
GCCACAGCCCCTTCTAGAGCAGTGTCACGTGTTTTACTTTCTGGCCCACT
GCCATGTCCTGTTTTCAGAGGAAGCTTCCTGGTGCCCACCCCTCCACTGT
CTTCTAAGCCCACCTGGATGATCACCTCCCACCCCCAGCTATTCCTGTCC
CACGCCGCCATGTCTTCTGTCCCAAGTGCTCCTGCAAGGAAGGAGCTGTG
CTGGTATATACCTGCTCAGGCAGCTCACGCTGTTTCCTGATGGACTCATC
AGGGAGTGCATCACATCACCCCTGATGTCCTCACACCCCAGGGGGCCTCG
TGTCTCAATTGCTCTCTTGATTTCTTATCTAGACCAAGTTAGTTAAACTC
AACTGTCTCAGTGTCCTCATCTGCGAAGGAAATAAGCAGTGAGCTGCGCC
TGCTTGCCTGGGGCCCTGCTGGTTAAAACAAATTCCCCGGCCCGGGAAAA
TTCCTAACTCCAGCAACATGGTGAAGAAGGCCCCGTAACTCCCCATTCCT
CCCGAACGAGGCGGCNACCCGAACATTCTCTACCCTTATGATATCCCCTT
GCCAGACCCCCTCCCCATTTCTTTTTTGTTTAACCCCCCCCCCCCTCCCT
CTCCTCCCTTTCCTCCTTCCCCCCCCCTCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_p22.b1 MSMg01no391_p22.b1 CHROMAT_FILE:
MSMg01no391_p22.b1 PHD_FILE: MSMg01no391_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:23 2005
         (377 letters)



>mm_chr8_127988058_127988834
          Length = 777

 Score =  706 bits (365), Expect = 0.0
 Identities = 374/377 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttagtgacaggaagtggagggactggcagaaaacgtgcagagctcacagcttctccagc 60
           ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 577 gttagtgacaggaagtggagggactagcagaaaacgtgcagagctcacggcttctccagc 518

                                                                       
Query: 61  caggcagcctgccacatgagccagggtaaaacccagctttggttctgttgttctttgtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 caggcagcctgccacatgagccagggtaaaacccagctttggttctgttgttctttgtca 458

                                                                       
Query: 121 agggcaaccatggtgaactttggattcagataccttccaggtcacttgaagggacagagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 agggcaaccatggtgaactttggattcagataccttccaggtcacttgaagggacagagg 398

                                                                       
Query: 181 ggtggctgaggatagagccaagggggagaggggcttgcttagatatgtgcaggtggtccc 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ggtggctgaggatagagccaaaggggagaggggcttgcttagatatgtgcaggtggtccc 338

                                                                       
Query: 241 cagtgggatcccatctgtggtatccagggagaaagatcaaacctgcctaacagcttccct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 cagtgggatcccatctgtggtatccagggagaaagatcaaacctgcctaacagcttccct 278

                                                                       
Query: 301 cccctcagatagtaacaagaggctgcgagactgtggaaatgaccctgagacgaaacgggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 cccctcagatagtaacaagaggctgcgagactgtggaaatgaccctgagacgaaacgggc 218

                            
Query: 361 tgggtcagcttggcttc 377
           |||||||||||||||||
Sbjct: 217 tgggtcagcttggcttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no391_p22.g1 MSMg01no391_p22.g1 CHROMAT_FILE:
MSMg01no391_p22.g1 PHD_FILE: MSMg01no391_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:23 2005
         (398 letters)



>mm_chr8_127943630_127944427
          Length = 798

 Score =  770 bits (398), Expect = 0.0
 Identities = 398/398 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcaccactaatggacaactctaaagcccggttcctcttctctctccaacccacagcgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcaccactaatggacaactctaaagcccggttcctcttctctctccaacccacagcgca 260

                                                                       
Query: 61  ccacacttcagcactgatgccacagccccttctagagcagtgtcacgtgttttactttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacacttcagcactgatgccacagccccttctagagcagtgtcacgtgttttactttct 320

                                                                       
Query: 121 ggcccactgccatgtcctgttttcagaggaagcttcctggtgcccacccctccactgtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcccactgccatgtcctgttttcagaggaagcttcctggtgcccacccctccactgtct 380

                                                                       
Query: 181 tctaagcccacctggatgatcacctcccacccccagctattcctgtcccacgccgccatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctaagcccacctggatgatcacctcccacccccagctattcctgtcccacgccgccatg 440

                                                                       
Query: 241 tcttctgtcccaagtgctcctgcaaggaaggagctgtgctggtatatacctgctcaggca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttctgtcccaagtgctcctgcaaggaaggagctgtgctggtatatacctgctcaggca 500

                                                                       
Query: 301 gctcacgctgtttcctgatggactcatcagggagtgcatcacatcacccctgatgtcctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctcacgctgtttcctgatggactcatcagggagtgcatcacatcacccctgatgtcctc 560

                                                 
Query: 361 acaccccagggggcctcgtgtctcaattgctctcttga 398
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaccccagggggcctcgtgtctcaattgctctcttga 598


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space:   306921
Effective search space used:   306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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