BAC Information

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BAC

Clone NameMSMg01-392A22
Chromosome8 (Build37)
Map Location 14,654,072 - 14,654,413
singlet/doubletsinglet
Overlap geneDlgap2
Upstream geneRasa3, 4932443I19Rik, LOC665516, Cdc16, Upf3a, AF366264, D8Ertd457e, 2410022L05Rik, EG665536, Fbxo25, LOC100041103, 2610019F03Rik, EG546036, Erich1, LOC100041140
Downstream geneC030037F17Rik, Cln8, Arhgef10, 2900016B01Rik, 5830468F06Rik, Kbtbd11, BB014433, Myom2, EG665599, EG234097, EG665619
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392A22.T7 (MSMg01no392_a22.b1)MSMg01-392A22.TJ (MSMg01no392_a22.g1)
ACCAG493683AG493684
length7881,204
length of high quality
(start - end)
342 (75 - 416)---
definitionCHROMAT_FILE: MSMg01no392_a22.b1 PHD_FILE: MSMg01no392_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:28 2005CHROMAT_FILE: MSMg01no392_a22.g1 PHD_FILE: MSMg01no392_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCG
CGGAATTCTAAATGATACACCCAGGAATTAAGTGGATTACTCTTGACTGA
AGTCATTTGCAAACTGAATTTGGTGACAACTTACAAAATGTCTCTCGGGT
CCCTTCAAAGAGGTAAGCATAATTCAGTCTGTGCCAGAGACAGCATCCAC
CCAGAGTAGTGCTCCATCCAGACTGAGACAAAGCAGGGGAGAAGGCTCTA
CAGAGTTCTGGAAGTTCTGAAAACACTGCCTTTCCATGTAATCAGAGAAT
TTGTGAGGGTCCCGGGGGGTACAGTCGTGAAAATGAGCTGTCATCAGCTA
TTCTCATTAGAATATGCAATTGCATATTAGCAAAATGTGTTTGGAATAAT
AACCAGCAGGCATTTCAACATGCTCCAAAACTGTAAGGCATCAGGCAAGA
ATTATGTTTTAAAAAAAAAATGGGAGAAAACCTCTCATTAGACAGTTCAC
TTTGATTTCAGTCTCCATAGAAACGGGATATTCCGATACACGGAGATATC
TTTGCCTCTGGAATTTTTTGCATGCCTTGGAATTTGCACATGTGCCCCGA
CAAAAAGCCCGATGTGATGCCTAGCGGATGAAGTTGCCACCACACGAGCC
CGCGCCCCCCAATGGAACTCTCCCTGTCGAACCGCCCATTCCAAACCTTT
TCTCTGGCAGCACCAACCCTGCGCCTCTTTTGGTAATACAAACACCCGCC
CTCTTTAACTGGCATTATACGCCCCTCCCCCGCCTTTG
AAGCGCTGCCGGCGATATTCGCGCTCACGCCGCGCCCGGGCCCCGTACCA
CGACGCGCGACGTTACTAGAGACGAGCTCTGTCGCGACCGCGGCGCCGTA
CGCGGCGCGCCGCGCGCCCCGCCGCAGCCTCGGCGCGTAATACGCGCGAC
ACCCGACACGTATACCGGCGAACAACGTGCCGCGCCGATGCGGCTTTCCG
TGGTCGGGCGTGCTGGGTGTCCCGGGAGCGTTTCTGTTCGCCACAAAACA
AAACGCGATGCGCGGGGGACGCGGACACGCGCACGAAGACCAGCGCAAGA
GGTGTGTTCTTTCCCCGCGCGGGCGCCATATCGAAGCGCCGCGCCGCTAG
ACGGCAAACGCCTTCCCGCGCGGGCCCACCACCGCGCGGCACGCGGAGTA
ACGCGACTCCACCAACTTCCCCGCCTATGCGGTGGCGTACAACCCGCGGC
GGTCTCCTCGCCACGCAGCCATCGCGGGCGGCGCCCGGTACGTTCTCTGC
TCAATCGCCCCTTCCAATATGCAGCCGTGCCGCGTGCCGATTGTACGCGC
CTGGTCTTACACGCCCACGCGGCACCGCCCTCGTACCATCCCTTATACGC
CGTCCACTTCGCGCGCCGCCGCGTCGTTCGCCGACCGCCGCGGCGGGGCC
GTCATCACTCGCGTATTGCCCGGTAATGCGCTTTCGGCCCCGCAAGGTGC
GCGCGGAGAGAGCGATATCAGACACGGACACGGCGCGCCCCGCGCCACAN
ACAGAGAGGCGCGAGCGGCCGCGCTCTCTCTCGAATGAACGCGCGCGACG
ATCTAGCGAGCTCGCNCNGCGACGCCGACTGCGCGCGCGCGCCGTAGAGT
GGCGCGNTGATGCCGGTCCCATCCCGCCNACAAGGCATCCGCAGTGTGAG
CTGCGCGCTGCTCCGCGCGAGTCACGCCGTGCTCATAGCGCGCCGTCCCG
ATCATATCGCGCCACGCACGCGCTCTGCGGCTCNANTTGCAGTCCNGTGC
GTGGTGCGGTATAGAGCTGAACAGGTGCACGACGGCGCGTCGAGACACAG
AGACGCACCTGAGCAGAGAACCGCACGCAGCCGCGACTGGCGAGGAGAGG
TGATCACGCGCGCGCCGTAGACACAGACGAGACACAGGCGGCGCCATACC
GAGCGTCGCCCGTTGTTCTACGCGCGCGGGCGTATACGCACACCGACATA
TCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_a22.b1 MSMg01no392_a22.b1 CHROMAT_FILE:
MSMg01no392_a22.b1 PHD_FILE: MSMg01no392_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:28 2005
         (342 letters)



>mm_chr8_14653872_14654613
          Length = 742

 Score =  646 bits (334), Expect = 0.0
 Identities = 340/342 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaattaagtggattactcttgactgaagtcatttgcaaactgaatttggtgacaacttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattaagtggattactcttgactgaagtcatttgcaaactgaatttggtgacaacttac 260

                                                                       
Query: 61  aaaatgtctctcgggtcccttcaaagaggtaagcataattcagtctgtgccagagacagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaatgtctctcgggtcccttcaaagaggtaagcataattcagtctgtgccagagacagc 320

                                                                       
Query: 121 atccacccagagtagtgctccatccagactgagacaaagcaggggagaaggctctacaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atccacccagagtagtgctccatccagactgagacaaagcaggggagaaggctctacaga 380

                                                                       
Query: 181 gttctggaagttctgaaaacactgcctttccatgtaatcagagaatttgtgagggtcccg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttctggaagttctgaaaacactgcctttccatgtaatcagagaatttgtgagggtcccg 440

                                                                       
Query: 241 gggggtacagtcgtgaaaatgagctgtcatcagctattctcattagaatatgcaattgca 300
           ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggggcacagccgtgaaaatgagctgtcatcagctattctcattagaatatgcaattgca 500

                                                     
Query: 301 tattagcaaaatgtgtttggaataataaccagcaggcatttc 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tattagcaaaatgtgtttggaataataaccagcaggcatttc 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)