Query= MSMg01no392_f13.b1 MSMg01no392_f13.b1 CHROMAT_FILE:
MSMg01no392_f13.b1 PHD_FILE: MSMg01no392_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:50 2005
(491 letters)
>mm_chr8_127999157_128000048
Length = 892
Score = 884 bits (457), Expect = 0.0
Identities = 483/497 (97%), Gaps = 11/497 (2%)
Strand = Plus / Plus
Query: 1 gtgtgtgcatagaaaatgttttgtttccaccaaagtaagtttggttgtacaattacagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgtgtgcatagaaaatgttttgtttccaccaaagtaagtttggttgtacaattacagtc 260
Query: 61 atttcttacatttttgactattttaaaaagaaaacattggctgtagacacgacacctcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttcttacatttttgactattttaaaaagaaaacattggctgtagacacgacacctcag 320
Query: 121 gaggagctgcagcagcaactgaacagtccctgccgccactctacctcagagtccaggttg 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 gaggagctgcagcagcaactgaacagtccctgctgccactctacctcagagtccaggttg 380
Query: 181 tgctgaggtgggagctacagctttcctccagaaccagagggagactagcttcagaaaatg 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgctgaggtgggagccacagctttcctccagaaccagagggagactagcttcagaaaatg 440
Query: 241 agcttttttt-----attgctcattttccc-acagtcctacttctcggtcttgccagcag 294
||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 agctt-----cagcaattgctcattttccccacagtcctacttctcggtcttgccagcag 495
Query: 295 aggccttgagcatcctagcagcagccgagcctgagagaccgacaggccttaaacgtcacc 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aggccttgagcatcctagcagcagccgagcctgagagaccgacaggccttaaacgtcacc 555
Query: 355 aactccctgcaggtgaggagccgaaacaagctgggcttgagtcctgagatgggaagctca 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aactccctgcaggtgaggagccgaaacaagctgggcttgagtcctgagatgggaagctca 615
Query: 415 gcctctaaaagaaccccacagctgaccccagcagcagagcaagacagagggacaggcagt 474
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gcctctaaaagaaccccacagctgaccccagcagcagagcaagacagagggacaggcagc 675
Query: 475 tcttggagcaagaacac 491
|||||||||||||||||
Sbjct: 676 tcttggagcaagaacac 692
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 892
Length adjustment: 10
Effective length of query: 481
Effective length of database: 882
Effective search space: 424242
Effective search space used: 424242
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no392_f13.g1 MSMg01no392_f13.g1 CHROMAT_FILE:
MSMg01no392_f13.g1 PHD_FILE: MSMg01no392_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:50 2005
(312 letters)
>mm_chr8_128219639_128220350
Length = 712
Score = 543 bits (281), Expect = e-159
Identities = 305/313 (97%), Gaps = 3/313 (0%)
Strand = Plus / Minus
Query: 1 tttccagtgttttcctgaagatacctcgacacttctgtgcttttaccagcacatatttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tttccagtgttttcctgaagatacctcgacacttctgtgcttttaccagcacatatttcc 400
Query: 61 gcactgacatgttttcctctcagatcttccaaagtcgcacttcatcgccgtctgttgtgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gcactgacatgttttcctctcagatcttccaaagtcgcacttcatcgccgtctgttgtgg 340
Query: 121 aaaaaaaaaaa-tcccacaactctgtgagtgtgtaatatgttctcattttcttttctttg 179
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 -aaaaaaaaaaatcccacaactctgtgagtgtgtaatatgttctcattttcttttctttg 281
Query: 180 gctgtcttcaagaattgtttctttatgctttattttcaataatttgtatatgacccaccc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gctgtcttcaagaattgtttctttatgctttattttcaataatttgtatatgacccaccc 221
Query: 240 aggtgtgtgtgtgtgtgtgtgagagagaaagagagagagagagagagagagagagagaga 299
||||||||||||||||||||| | | || |||||||||||||||||||||||||||||||
Sbjct: 220 aggtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagaga 161
Query: 300 gagagagagagag 312
|| ||| ||||||
Sbjct: 160 ga-agaaagagag 149
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 13
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space: 213009
Effective search space used: 213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
