BAC Information

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BAC

Clone NameMSMg01-392J14
Chromosome8 (Build37)
Map Location 115,542,687 - 115,707,123
singlet/doubletdoublet
Overlap genenone
Upstream geneTerf2ip, LOC672498, LOC100042040, Cntnap4, LOC100042061
Downstream geneMon1b, 4930481F22Rik, Adamts18, Nudt7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392J14.T7 (MSMg01no392_j14.b1)MSMg01-392J14.TJ (MSMg01no392_j14.g1)
ACCAG494096AG494097
length775803
length of high quality
(start - end)
450 (77 - 526)303 (70 - 372)
definitionCHROMAT_FILE: MSMg01no392_j14.b1 PHD_FILE: MSMg01no392_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:10 2005CHROMAT_FILE: MSMg01no392_j14.g1 PHD_FILE: MSMg01no392_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,542,687 - 115,543,135)(115,706,821 - 115,707,123)
sequence
NNNATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATC
CGCGGAATTCTATATTTTCTCTAACAAAGAAAACGGAAAATTTACACAAA
CTCTGACCTTTAGACCAAACCTGGTAGGAATTTTAAAAAAGTAAAACTCT
GGGTAAAAAGGAGGCTCATGAGGTAAAGGTGTTTGCCACAAGCCTGAGGA
CCTGATATCAATTCATCACCCACATGTGGAAGGAGAGAACTGACTTCTAC
AAATTGTTCTCTGACCTTTATACACAAACCACTGTGGCATGTCTCAATGC
ATATAAACACATATATGTATATACTTTTACAGGCACACAAACAACAAATG
AGTACAAGCAAAGAAAAAGAATAAAGAAAAGAAAAACCAAAAAGCCCAAA
TTGCTAAATAGTAGCAAAACAAATTCATAATTGTATTCATGATTAAGGGC
AGAATATTCAGGGGACCAAAACCAGCTTAATATGCAAAATATCTTTCAAC
ACAATTTATTATTAAAATGGAACAATGAAGACATAAGGCTAGGGGTGGGG
CTAATTTGGCAGAAAGCTTGCTTACCATTCAGGAAACTCTACCCTTGATC
TCCCTACTTGCAGGGCATTTTTGTGACAGTCCGCAACCCCTGAATTGAAC
AGGCGCATGAATGATTATCCCCAACTCCTGGCCCCTCCTTAAGTCACTTA
CGAACCAACGGAACTAACCCGGCGCCACCTGGACAGACCCCGGTTACTCC
CCCCTTTACAGTCCACAACAACCCG
CCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTCTTCATCCAGCCTCCTGTCTCTGATGGC
TCCTTATTTACCAGTTCCTTTGGTTCTTACTCCTCCTCGTGGGGGAACAT
CTCCAGTGAAGCTATATCACCTCAGCGGGAAGCAAAAAGAATCAAACAAG
GACAAACATCAAACCACAGAAACAGCACCAAGTTCTTGCCTAATTTTATC
CCAGGAGTAAAAAACAAAAACAAAAACAAAAACACAAAACTAGCCTTAAA
GGAAAATTAAATACAATGGCTTATTGCTGAATGGTGTAGTTTGCTTAAGG
ATTCAGTCGTTTGTCTTTGCCTCCCACATATGAGAAAGGAGTTTAGTAAC
AACCACTAGTCCGCACCAAAAACTCACTCTCTGGTTTCACACATTTCCGA
TTGTATCGCTGCGGTCACAGTTATTCCCCATTTACCGATCCTGCGGCTTC
CGTTATTCGGCTAGTGACCCTTCAGTTTATCCCCTTGCCTCTCTATTGTT
TCCCCGCCTGCCTTCCTTTACCTCCCCCGCCCCCACTTCCCCCCGCTTTT
TCTTCTGTCGCCTCCGCTCCCCTTCGCCTTTGTTCTTCTCTCCTCCCCTC
TCCTCCCCCCCTCTTCCCTCTTCCCCCTCTTTCTTCTTATTCGCTACTTA
TACCTCCCCCCCCTCAACCTCATTTTTTCCCCCCCTTCTTTTCTTCCCCC
TCCTTTTTTCCCTTCCCCTCCTCTGACCTTTCCCTTTCCTCATTTTCCCG
TCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_j14.b1 MSMg01no392_j14.b1 CHROMAT_FILE:
MSMg01no392_j14.b1 PHD_FILE: MSMg01no392_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:10 2005
         (450 letters)



>mm_chr8_115542486_115543335
          Length = 850

 Score =  822 bits (425), Expect = 0.0
 Identities = 443/449 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   agaaaacggaaaatttacacaaactctgacctttagaccaaacctggtaggaattttaaa 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 agaaaacggaaaatttacacaaactctgacctttagaccaaacctggtaggaattttaaa 261

                                                                       
Query: 62  aaagtaaaactctgggtaaaaaggaggctcatgaggtaaaggtgtttgccacaagcctga 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaagtaaaactctgggtaaaaaggaggctcatgaggtaaaggtgtttgccacaagcctga 321

                                                                       
Query: 122 ggacctgatatcaattcatcacccacatgtggaaggagagaactgacttctacaaattgt 181
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ggacctgatattaattcatcacccacatgtggaaggagagaactgacttctacaaattgt 381

                                                                       
Query: 182 tctctgacctttatacacaaaccactgtggcatgtctcaatgcatataaacacatatatg 241
           ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 382 tctctgacctttatatacaaaccactgtggcatgtctcaacgcatataaacacatatatg 441

                                                                       
Query: 242 tatatacttttacaggcacacaaacaacaaatgagtacaagcaaagaaaaagaataaaga 301
           |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tatatacacatacaggcacacaaacaacaaatgagtacaagcaaagaaaaagaataaaga 501

                                                                       
Query: 302 aaagaaaaaccaaaaagcccaaattgctaaatagtagcaaaacaaattcataattgtatt 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aaagaaaaaccaaaaagcccaaattgctaaatagtagcaaaacaaattcataattgtatt 561

                                                                       
Query: 362 catgattaagggcagaatattcaggggaccaaaaccagcttaatatgcaaaatatctttc 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 catgattaagggcagaatattcaggggaccaaaaccagcttaatatgcaaaatatctttc 621

                                        
Query: 422 aacacaatttattattaaaatggaacaat 450
           |||||||||||||||||||||||||||||
Sbjct: 622 aacacaatttattattaaaatggaacaat 650


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no392_j14.g1 MSMg01no392_j14.g1 CHROMAT_FILE:
MSMg01no392_j14.g1 PHD_FILE: MSMg01no392_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:10 2005
         (303 letters)



>mm_chr8_115706734_115707436
          Length = 703

 Score =  547 bits (283), Expect = e-160
 Identities = 298/303 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcttcatccagcctcctgtctctgatggctccttatttaccagttcctttggttctta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 390 actcttcatccagcctcctgtctctgatggctccttatttaccagttcctttggttcttc 331

                                                                       
Query: 61  ctcctcctcgtgggggaacatctccagtgaagctatatcacctcagcgggaagcaaaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ctcctcctcgtgggggaacatctccagtgaagctatatcacctcagcgggaagcaaaaag 271

                                                                       
Query: 121 aatcaaacaaggacaaacatcaaaccacagaaacagcaccaagttcttgcctaattttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aatcaaacaaggacaaacatcaaaccacagaaacagcaccaagttcttgcctaattttat 211

                                                                       
Query: 181 cccaggagtaaaaaacaaaaacaaaaacaaaaacacaaaactagccttaaaggaaaatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 cccaggagtaaaaaacaaaaacaaaaacaaaaacacaaaactagccttaaaggaaaatta 151

                                                                       
Query: 241 aatacaatggcttattgctgaatggtgtagtttgcttaaggattcagtcgtttgtctttg 300
           |||||||||||  | ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 150 aatacaatggcagaatgctgaatggtgtagtttgcttaaggattcagttgtttgtctttg 91

              
Query: 301 cct 303
           |||
Sbjct: 90  cct 88


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)