BAC Information

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BAC

Clone NameMSMg01-392P19
Chromosome8 (Build37)
Map Location 72,317,705 - 72,317,858
singlet/doubletsinglet
Overlap geneAtp13a1
Upstream geneInts10, Lpl, LOC100041138, Slc18a1, Atp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561, LOC670593, EG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik
Downstream geneGmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392P19.T7 (MSMg01no392_p19.b1)MSMg01-392P19.TJ (MSMg01no392_p19.g1)
ACCAG494393AG494394
length803831
length of high quality
(start - end)		368 (45 - 412)154 (72 - 225)
definitionCHROMAT_FILE: MSMg01no392_p19.b1 PHD_FILE: MSMg01no392_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:43 2005CHROMAT_FILE: MSMg01no392_p19.g1 PHD_FILE: MSMg01no392_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATCXXXXXXXXXXXXXXXXXXXXXXATCCTATTTCCAGAGGATCCGC
GGAATTCTCCACTTTCCTATCTGGTCCTGGGCTGGTTTTGGTTGGGAGAC
TTAATGACTGCTTCTATTTCTTTAGAGGTTATGGGATTATTTAGATGGCT
TATTTGATCCTGTTTAACTTTGACATCCTGTATGTATCTAGAAAATTGTC
CATTTCATAAAGATTTTCCAATTTAGTTGAGTATAAACTTTTGTAATAGG
ATATGATGATTTTTTAATTTCCATGCTTTCCGTTGTTATATCTCCCTTTT
CATTTCTGATTTTATTAATTTGGATACTGTCTCTGTGTCCTCTGGTTAAT
CTGGTTAAGGGTCTATCTATCTTGTTGATTTTCTCAAGGAACCAGCTCCT
GGTTTTGTTGCACCCCCCCCCCCCTCTTTTTGTTTGTACTTGCCCGACTT
CCCCCCCGAGTTCGATCATTTCCCGTCTTCTACCCCCCCCGGGTGCACTT
GCCCCCTCCTGTTCTACACCTTCCTCTTTTACTATCCTGCCTGCCATCCC
TCATTTTTTCCTCCGACTCCCCCCTCTTATCTTCCTTCCCCCCCTCAACT
TCCCTCCCCCCCCCGGTCCCCTCCTCTCTTCCTTTACCTCCCGCCCCCTT
CCTTCTCTCTCTTTCTTCCCCCCCTCCCCATCCCCCTTCTTTTTTTCTTC
CCCTTCCCCACCCCTTTCTCCTTCCTTCTCCTCCTCCCCCCTCCTCTCCC
CCCCCCCTCCGTCCTTTTTCCCCTTTTCCCCCTTCTTCCCTCCCCCTTCC
CCC

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAATGACAGCACCTCCAGCCCATCTTCAC
CCTGGGGTGGAAGGTGTGTTTGTGGCAGAAGTCCCCTGACCTGGGGACAC
TGCCTGTTCCACCTACCCTGCAGGACATAGATCCCTTCCTACCTTGTCAC
GGCGCAGGGCCACAAGCTCAGTGGAGCCCTTGCTGGGGGCTGGCACCATC
TTCACAAAGGTTACTTTGTTGGTATCCCTACTCCTGCCATAAACCCTACA
CTGTTACGGTAGCCCCTTTTTTTTCTCTACCACACGCCCCTCCTACCCCC
AGAGTGCCACTTCTCGTCCCTACGCCTGCCTTCATCTCCCCTTGACTCAC
CACCTCTGCCTTCATCTCGTTCCCCCCCCCTGCCTCCCCTCTTTCCCCTC
CTCTCCTACCCTGGCCCTTTCCCCTATTTTACGCCCCCTATCCCCTTCTC
TCTTTTACTCGCCTCCCCACCCCCCCCAATACCCATCATCTCCTGCCATT
TTTGCCACCTCACTTTCCCCTCCCCGGCCCCTCCCTCTCGCCTTGTTCCT
CCTCCCCCCCCCTATCCTATTCTCACTCCCTCCCTTCCCTTGCTACCCCC
TCCCTTTTTCCCCCCTCCCCCCCCTCTTTATTCCGCCTCTGCCTTAAACT
TCCGGAACCGTTCCATCCCTCTCCTCCACTCTTCCCCCCTCCCCCTTGGC
CTTCCTTTCCCCTGCCGTTTGCCTCTATTTCTCCTCCCTTCTTACCCCCC
CTTTCTCCCCCCCCTTTTCTCCCCACTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_p19.g1 MSMg01no392_p19.g1 CHROMAT_FILE:
MSMg01no392_p19.g1 PHD_FILE: MSMg01no392_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:43 2005
         (154 letters)



>mm_chr8_72317505_72318058
          Length = 554

 Score =  282 bits (146), Expect = 5e-81
 Identities = 152/154 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatgacagcacctccagcccatcttcaccctggggtggaaggtgtgtttgtggcagaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aaatgacagcacctccagcccatcttcaccctggggtggaaggtgtgtttgtggcagaag 295

                                                                       
Query: 61  tcccctgacctggggacactgcctgttccacctaccctgcaggacatagatcccttccta 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 294 tcccctgacctggggacactgcctgtcccacctaccctgcaggacatagatcccttccta 235

                                             
Query: 121 ccttgtcacggcgcagggccacaagctcagtgga 154
           ||||||||||| ||||||||||||||||||||||
Sbjct: 234 ccttgtcacggtgcagggccacaagctcagtgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 154
Length of database: 554
Length adjustment: 8
Effective length of query: 146
Effective length of database: 546
Effective search space:    79716
Effective search space used:    79716
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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