BAC Information

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BAC

Clone NameMSMg01-395A10
Chromosome8 (Build37)
Map Location 60,467,906 - 60,468,323
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040515, Hand2, Scrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634, LOC100040711
Downstream gene4930431L04Rik, BC030500
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395A10.T7 (MSMg01no395_a10.b1)MSMg01-395A10.TJ (MSMg01no395_a10.g1)
ACCAG495942AG495943
length750782
length of high quality
(start - end)
507 (50 - 556)337 (78 - 414)
definitionCHROMAT_FILE: MSMg01no395_a10.b1 PHD_FILE: MSMg01no395_a10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:06:43 2005CHROMAT_FILE: MSMg01no395_a10.g1 PHD_FILE: MSMg01no395_a10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:06:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAACATATTCCATTATTATTATTATTATTATTATTATTACTA
CTACTACTACTACTACTACTACTACTACTACTACTACTATTACTACTACT
ACTACTACAACTATCTGTGCTGGTAGAAAAGGGAAAAAAGATCATTTCCA
ATCTAAATCTATAATTTCGTCTTATAAGCAGCACTTAATGGTGGACGCAT
CCTAAGGTGATCTCCACTGATTTTCTGCTTCTAGTTTCTTTGTGAATTTT
ACCGCCTCACTTCCAATGTTTACTCAATTTGTGCTTTGCTACTTACTAAC
TTAGTAGGACCAAGATGATGTACTGTGAGCCCTGATTGACTTAGTTTATG
TTAGAATGGTGAACTAGAATTCCTATCAGGCTTGATGGCTTTATCAGCTC
TGTAGAGGAAACTGGATGCAAAAAAGCTTTAGACAGTCTCCAACAGCTGA
GGTCGCCTCTAGCTCATGGTCAAGGAAAAACCTGGAGCATTAAGGCCTAA
AACTGATAATCAAGGAGTTCTGCCTACAACGTGAATAAGCTTGGAAACAG
ATCCACTCTCAGTTGGCCTTCTGTAGGAGACTGTAGCCTGACAGTAATTG
CTGTCTGGGAGACTCTCATCATAAGACCTATTTTTGCCACGCTGACCCAT
AATCCTTGGCTTCCGGAAACCCTGAAGAAACTAATATTGGCCCTTCTTAA

CCTCATTATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTAAC
ATGAGGTGATGTTGTGTTTTGTCAAAATGCTTTACAGCATCTAATGAGAT
GATCTTGTGTAATTTTATTTGAGTTTTTTAATATAGTAGATTACTTTGAT
AAACTTTTTAGTATGTTTAATCATCCCTGGGATGAAGCCTACTTAGTCAT
ATTGAATGTTGGCTTTGGTGTGTTCTTGGAATCAGTTTTCAAGAATTTTA
TTGAGCATTTTTGCATCTATATTCATAAGCAAAATGGTCTGAAGTTCTCC
TTATTAGGTCTTTGTGTGATTTAGGTATCAGAGTAACATGGTTTCATAGA
ATTAATTAAATAGCGCTTGTTTTGTTTCTATTATATGGAATATTTTGAGG
AGTGTTGGTATTACCTCTTCCTTGAAGTACTGGTATACATTCCGCACTAT
ATTTCTCCTGTCCCTCGTCTCCCCTTATTTTCGCGTTACCTTACCTTTCT
AATCCCCCTTTCTTCTCTTTTTTTCGCCTTTACTCTTTCTATTTACCCCT
CCTCCTCTCCTTTCTTTCCCTTTCTTACCCTCTCCCTTTTTTTTTCATCC
CTCTCTCCCCCTTCTACTTTTCTACTTTTCACTCCTTTTTTGTTTTTGTC
CCTCTTTTCTTATTTTAACTTTTTCTCTCCCTCTTTCTCCCCACCTATCA
CCCTTCCCCTTTCCTTTTTTCCTTTTTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_a10.b1 MSMg01no395_a10.b1 CHROMAT_FILE:
MSMg01no395_a10.b1 PHD_FILE: MSMg01no395_a10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:06:43 2005
         (507 letters)



>mm_chr8_60467621_60468523
          Length = 903

 Score =  712 bits (368), Expect = 0.0
 Identities = 407/422 (96%), Gaps = 4/422 (0%)
 Strand = Plus / Plus

                                                                       
Query: 86  tactattactactactactactacaactatctgtgctggtagaaaagggaaaaaagatca 145
           ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 286 tactactactactactactactacaattatctgtgctggtagaaaagggaaaaaagatca 345

                                                                       
Query: 146 tttccaatctaaatctataatttcgtcttataagcagcacttaatggtggacgcatccta 205
           |||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||
Sbjct: 346 tttccaatctaaatctataatttcttcttataagcagcacttattggtggatgcatccta 405

                                                                       
Query: 206 aggtgatctccactgattttctgcttctagtttctttgtgaattttaccgcctcacttcc 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aggtgatctccactgattttctgcttctagtttctttgtgaattttaccgcctcacttcc 465

                                                                       
Query: 266 aatgtttactcaatttgtgctttgctacttactaacttagtaggaccaagatgatgtact 325
           |||||  || ||||||||||||||||||||    ||||||||||||||||||||||||||
Sbjct: 466 aatgtaaacacaatttgtgctttgctactt----acttagtaggaccaagatgatgtact 521

                                                                       
Query: 326 gtgagccctgattgacttagtttatgttagaatggtgaactagaattcctatcaggcttg 385
            ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 atgagctctgattgacttagtttatgttagaatggtgaactagaattcctatcaggcttg 581

                                                                       
Query: 386 atggctttatcagctctgtagaggaaactggatgcaaaaaagctttagacagtctccaac 445
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 582 atggctttatcagctctgtagaggaaactggatgcaaaaaagctttagacagtctccaat 641

                                                                       
Query: 446 agctgaggtcgcctctagctcatggtcaaggaaaaacctggagcattaaggcctaaaact 505
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 agctgaggtcgcctctagctcatggtcaaggaaaaacctggagcattaaggcctaaaact 701

             
Query: 506 ga 507
           ||
Sbjct: 702 ga 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 903
Length adjustment: 10
Effective length of query: 497
Effective length of database: 893
Effective search space:   443821
Effective search space used:   443821
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)