BAC Information

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BAC

Clone NameMSMg01-396A16
Chromosome8 (Build37)
Map Location 117,426,360 - 117,426,789
singlet/doubletsinglet
Overlap geneWwox
Upstream geneNudt7, AI427515, Clec3a
Downstream geneMaf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396A16.T7 (MSMg01no396_a16.b1)MSMg01-396A16.TJ (MSMg01no396_a16.g1)
ACCAG496714AG496715
length844791
length of high quality
(start - end)
194 (61 - 254)430 (69 - 498)
definitionCHROMAT_FILE: MSMg01no396_a16.b1 PHD_FILE: MSMg01no396_a16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:04 2005CHROMAT_FILE: MSMg01no396_a16.g1 PHD_FILE: MSMg01no396_a16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGGATCCGCGGAATTCCAGG
AAAATCTCCGCTACACAGAGAAACCCTATCTCAAACAAACAAACAAAAAC
AAAAAACCAAACCAAACCAAACAAAACAAGGCCAAAAATAAACATTTGAC
AATAGATATAATCAAAAAATGTATATAAGACATTATTGAGGTATTTATAA
GTATGAAAAGATATATGTTCTTGGAAATGGGTGTGTGTGTGTGTGTGTGT
GTGNCCACCATGCTCTTACATTTTCTTTATTACCACATCCTCATCCCCAC
ACCTTTTATCTTTTTTTTTTTTTCACTTTCTTCTCCCCCCACTTTCCCCC
CTTCCCCCCCTACCTCCTCTTTTCCCTTCACCTCCCTATTTCCTTCTAAT
CCCCTTACCCTCCCCCCCCCCACCCTATCTTTACTTTTTTTTCCTACCCT
TTTATTCCATCTTCTCTTCCCTTAATCCCTTTTCCCCCACTCCCCCTCAA
ATCTATTACTTTCTTTACCCATACTTTCTCACTCCCCTTAATCCTCCCTC
TTCTCCACACTTTCCTCTCTTCCCCTTTTCTTTTTCCCCTACTTCTTATC
TTCCCACATCTCCTCTCATCTTTCTATTCCTCTTCTCCTTCCTCCTTTTC
TCTCCACTTCTTTCCCCCCTCCTCTCCCTTCCCCCTCTTATTTCATAACA
TCTTTCCTATCCCCTCCTCACTCTCTCCCTGTTTTTCTTTTTTTTCCCCC
TACCTCACTTACTTTCTTCCTCCCTCCTTTTTACCCCCCCTTTTCTTCCC
TTTCCTCTAATTCACCTTCTACTTCACCCCTCCTCTTTTCCTCT
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATGGATGAACCTGTCAGATTTCCGCTCCTGAT
GGAGTGACGGGTTTCTTATGACATCATCTCTAGACCGACCCGGTTGATAT
GTTTACCCAAAGTCTTACCTAATGTTTTCACGGGGACTTCTTTTTGGTGG
AAGATAACAACTGAGAGTGTTTTAAATAATAAACGAAGGCTGCTGAAGAG
GAGGCTATGCATGCATCCCATGCCTCCATTGTGTGGTACTGAAGAGCTCA
CGTGAGCACTCTCCCTGTGTCTCGGCAACTCCTGCCATACCAAGTCTGTT
TGCACATCCTCTGAGGCATGGGGAGTTGCTAAGCCATTAGTGCTTGAGTG
TTCTGCTTCCTGCATGCCTCTCCTCATCCTGCTCTGGCTCCTCCCTCTGC
TGTCTCACCTTGCACTTTGCTCTGGTCTTATCCAAAGTTCTTCCTAAGCA
AACTAGCCTTCATGACGCCCTATATTAACCAGTACCTCGTTCCCTCTGGT
TTTCTCTAAATGCTTTGGAGCCCCCCCTTATCGCCCCTTGGCTCATGTCC
TTTTTATTTCTCCCTTACTCCCCACCCGTTTGTATCATGGCTACACCTTC
TCTATCCCCCCCTTCCAAAATCCCCGTTTCTTCCTCCCTTTTTTTCCCCC
ATTTTCTCCGGGGCTTTATTTTCTTATTTCCCCTTATTTTTCTCTCCCCA
CCCTTACCTCCCACCCCTCCCTTTTTTCTCTATTTACACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_a16.g1 MSMg01no396_a16.g1 CHROMAT_FILE:
MSMg01no396_a16.g1 PHD_FILE: MSMg01no396_a16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:04 2005
         (430 letters)



>mm_chr8_117426160_117426989
          Length = 830

 Score =  785 bits (406), Expect = 0.0
 Identities = 424/430 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggatgaacctgtcagatttccgctcctgatggagtgacgggtttcttatgacatcatc 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggatgaacctgtcagatttacgctcctgatggagtgacgggtttcttatgacatcatc 260

                                                                       
Query: 61  tctagaccgacccggttgatatgtttacccaaagtcttacctaatgttttcacggggact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctagaccgacccggttgatatgtttacccaaagtcttacctaatgttttcacggggact 320

                                                                       
Query: 121 tctttttggtggaagataacaactgagagtgttttaaataataaacgaaggctgctgaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctttttggtggaagataacaactgagagtgttttaaataataaacgaaggctgctgaag 380

                                                                       
Query: 181 aggaggctatgcatgcatcccatgcctccattgtgtggtactgaagagctcacgtgagca 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 aggaggctatgcatgcatcccatgccttcattgtgtggtactgaagagctcacgtgagca 440

                                                                       
Query: 241 ctctccctgtgtctcggcaactcctgccataccaagtctgtttgcacatcctctgaggca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctccctgtgtctcggcaactcctgccataccaagtctgtttgcacatcctctgaggca 500

                                                                       
Query: 301 tggggagttgctaagccattagtgcttgagtgttctgcttcctgcatgcctctcctcatc 360
           |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggggaattgctaagcccttagtgcttgagtgttctgcttcctgcatgcctctcctcatc 560

                                                                       
Query: 361 ctgctctggctcctccctctgctgtctcaccttgcactttgctctggtcttatccaaagt 420
           ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 561 ctgctctggctcctccctctgctctctcacctagcactttgctctggtcttatccaaagt 620

                     
Query: 421 tcttcctaag 430
           ||||||||||
Sbjct: 621 tcttcctaag 630


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space:   345641
Effective search space used:   345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)