BAC Information

Click to search

BAC

Clone NameMSMg01-397K06
Chromosome8 (Build37)
Map Location 74,718,709 - 74,718,923
singlet/doubletsinglet
Overlap geneHsh2d
Upstream geneLOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374, Tpm4, Rab8a
Downstream geneCib3, 2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2, Eps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a, Nwd1, Sin3b, F2rl3, Large
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397K06.T7 (MSMg01no397_k06.b1)MSMg01-397K06.TJ (MSMg01no397_k06.g1)
ACCAG497933AG497934
length770857
length of high quality
(start - end)
249 (69 - 317)215 (76 - 290)
definitionCHROMAT_FILE: MSMg01no397_k06.b1 PHD_FILE: MSMg01no397_k06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:08 2005CHROMAT_FILE: MSMg01no397_k06.g1 PHD_FILE: MSMg01no397_k06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTATAATTGTGGCGCTAAACGACTCCTATATCCACAAATCCGCGGAAT
TCTGCGTTCTTTCCCGGCTGCTTTGGACCCTGTTAGGCAGCCCTCTGGGA
CGCACTCTCCTGACTCCTTCCCATGATGGCTATGTCTCTCTGTTCTACAC
TCTTCTCAGGCCTGGTTTCTCTCTTCTCCTCCACACTGTCCTGGCATGGC
AGATCTCCTCCCCTCCCTCCTCCTCATCCCAATCCTGGGAAATCCTAAAA
TCCTGCCTCTCTCAGTCCTTCCCAACTATTGGCTGGTGGTATTTTTATTT
ACCAATCAGGACTAACCTTTTATGGGACAGGTTCACAGAAGCTACATGCA
GATACTCTCATGCAAGCAGTTTTTTGGCAACATAGTTAGTATTCATAATA
TAAACAACAACAGTCCCCAATAACAGGGTGTCCTTTTTGTGCCTGAGTAA
TATTCCACTAGAAGTATACATCTCATGCATGCAATCACAGTTTTCATCAT
TCCTTCCCTGATATGCGTTATTCCCCGCCTTATTTCCTATGGCCGTATAT
GCAATGGATCACAACTTGTTTTACACATATTTGTCTTCCCTCTTGATATT
TCATCACCATTTTCTCCTTTTTGCATTCTATCTCCCTATTCCCCCCCCTA
TTTTATCCCCCCCATTTTTTTCAAAAACTCTTTTCATCTCTTCTTCTATT
ACCCCATTCTTTTTCTCCTCTTTATTCCCCTCCCTCCCTTACACCCCTCT
TACTTTTCCTCCCTCATTTA
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTAAACATTCTGAGTCACATGGCTT
ACTGCCAATCTCTTTTAATTTTTATTACATTTAATGTATTTATCCTGTTT
GCACGGGCAGATGTGCTGACACATTCAGAAGTCAGAGACAGCCTACAGAG
GTGGTTTTCTCCTGCCATGTGGGTTGTTGTTGTAGCCTCCAAATTACTGA
TGCTATTTCTCTGTGGCTAATTGTTCTGCTTCTTGGAAGTCTCACCTTAT
AGACCCCTGCATTGCATGCACTATTTTTTTTTTCCGTTCCCGCACCTTTT
ACACTGATTGTGTCTTTATTTACTCATGTTGACCTAGCTTCCCTGTCCTG
CTTTTTCTATTTTTGTCCCGTTCTTTACATATCACTGTTTTTTTTCCTTT
TCTACTCCTTCCTCTCTTTTTCCTACATTCCTCCTCCCCCTCTCTTTTTT
TCTTCTTTTCTCCCCCCCCTTTCTTTTTCCCTCGTTCCTTTTTTACTTCT
CCCCTCCTCGCTCTCTCTCTTCTCCTCTTTTTTTTTTCTCTACTTGTCCC
CCCTTCTTTCTCTTTCCCTCTTCTCTTACCTTCTTCTTCTTTTCTTACCC
CTCTTTCTCCTTTCCCTACTCTTCACTCCCCTTCTATATTTTTCTCGCTA
TTTCTACCCCATATTATTTTTTTTCTTTCTTTCTATCCCACCTTAATCAC
TCCTTTTCACCTTATTNTCTTCCTTTTTCTATATCCTCTCATATTTCATC
CTCATTTCTATTATTCCCCTTCTCTAACGTCCTTTTTCCTCTTTTCTTCT
CTTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_k06.g1 MSMg01no397_k06.g1 CHROMAT_FILE:
MSMg01no397_k06.g1 PHD_FILE: MSMg01no397_k06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:08 2005
         (215 letters)



>mm_chr8_74718509_74719123
          Length = 615

 Score =  400 bits (207), Expect = e-116
 Identities = 213/215 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaaacattctgagtcacatggcttactgccaatctcttttaatttttattacatttaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ttaaacattctgagtcacatggcttactgccaatctcttttaatttttattacatttaat 356

                                                                       
Query: 61  gtatttatcctgtttgcacgggcagatgtgctgacacattcagaagtcagagacagccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gtatttatcctgtttgcacgggcagatgtgctgacacattcagaagtcagagacagccta 296

                                                                       
Query: 121 cagaggtggttttctcctgccatgtgggttgttgttgtagcctccaaattactgatgcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 cagaggtggttttctcctgccatgtgggttgttgttgtagcctccaaattactgatgcta 236

                                              
Query: 181 tttctctgtggctaattgttctgcttcttggaagt 215
             |||||||||||||||||||||||||||||||||
Sbjct: 235 actctctgtggctaattgttctgcttcttggaagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 615
Length adjustment: 9
Effective length of query: 206
Effective length of database: 606
Effective search space:   124836
Effective search space used:   124836
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)